LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g0386	atgtttcttgTTGATTGGTTCTATGGAATTCTGGCGACCCTTGGTCTATGGCAAAAGGAGGCGAAGATTTTATTTCTAGGTTTAGATAATGCTGGGAAGACCACTTTGCTTCACATGCTAAAAGACGagAGATTAGTTCAGCATCAACCTACTCAATTTCCCACTTCGGAGGAGTTGAGTATTGGGAAGATAAAATTCAAGGCTTTCGATTTGGGTGGCCACCAGATTGCTCGTAGGGTCTGGAAGGACTATTACGCTCAGGTGGATGCTGTAGTCTACCTGGTCGATGCATTTGACAAGGAAAGATTTTCAGAATCAAAGAAGGAGCTGGATGCTCTTCTTTCTGATGAGTCACTAGCAAATGTGCCTTTCCTTATCTTGGGAAACAAGATTGACATACCTTATGCTGCCTCGGAGGATGAGTTACGTTATCACATGGGCCTGACTAACTTCACCACAGGCAAGGGCAAGGTTGATTTGGCTAACTCTAATGTTCGTCCTTTGGAGGTGTTCATGTGTAGTATTGTCCGCAAGATGGGATACGGTGAAGGCTTTCAGTGGCTCTCTCAGTACATAAAATAG	582	0.433	MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQFPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAFDKERFSESKKELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGKVDLANSNVRPLEVFMCSIVRKMGYGEGFQWLSQYIK	193

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g0386	193	SMART	sar_sub_1	4	192	IPR006689	GO:0003924\|GO:0005525
	Ssu6g0386	193	Gene3D	-	1	193	IPR027417	-
	Ssu6g0386	193	CDD	Sar1	2	192	-	-
	Ssu6g0386	193	PANTHER	RE74312P	1	193	IPR006687	GO:0005525\|GO:0006886
	Ssu6g0386	193	PRINTS	GTP-binding SAR1 protein signature	166	190	IPR006689	GO:0003924\|GO:0005525
	Ssu6g0386	193	PRINTS	GTP-binding SAR1 protein signature	22	45	IPR006689	GO:0003924\|GO:0005525
	Ssu6g0386	193	PRINTS	GTP-binding SAR1 protein signature	50	74	IPR006689	GO:0003924\|GO:0005525
	Ssu6g0386	193	PRINTS	GTP-binding SAR1 protein signature	122	143	IPR006689	GO:0003924\|GO:0005525
	Ssu6g0386	193	PRINTS	GTP-binding SAR1 protein signature	77	102	IPR006689	GO:0003924\|GO:0005525
	Ssu6g0386	193	ProSiteProfiles	small GTPase Arf family profile.	14	192	-	-
	Ssu6g0386	193	TIGRFAM	small_GTP: small GTP-binding protein domain	19	135	IPR005225	GO:0005525
	Ssu6g0386	193	ProSiteProfiles	small GTPase SAR1 family profile.	14	192	-	-
	Ssu6g0386	193	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	17	192	IPR027417	-
	Ssu6g0386	193	PANTHER	PROTEIN SAR1A, PUTATIVE, EXPRESSED-RELATED	1	193	-	-
	Ssu6g0386	193	SMART	arf_sub_2	3	193	-	-
	Ssu6g0386	193	Pfam	ADP-ribosylation factor family	8	192	IPR006689	GO:0003924\|GO:0005525

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g0386	Ssu-Chr6	6172014	6174017	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g0386	19	146	Miscellaneous Gene Families	AT5G05670	27.857	4.85e-06	43.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g0386	K07953		-	gmx:100811178	384.415

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu6g0386	6	6172014	6174017	Ssu6g0386	6	6172014	6174017	ECH
	Ssu6g0386	6	6172014	6174017	Ssu7g1781	7	36292574	36294957	ECH
	Ssu6g0386	6	6172014	6174017	Ssu4g0431	4	7032354	7035556	ECH