Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1255 atgtttcTTCTTGATTGGTTGTACGGAATTCTGGCATCGCTGGGTCTGTCCCAAAAAGAGGCTAAGATCTTGTTCCTTGGCTTAGATAATGCTGGCAAGACCACTTTGCTTCACATGCTCAGAAATGAGAGACTGGTTCAGCATCAACCCACTCAATTCCCAACTTCGGAGGAGTTGAATATTGGAAAGATTAAATTCAAAGCCTTCGATTTGGGTGGCCACCAGATTGCTCGCAGAGTCTGGAGGGACTATTATACTCAGGTTGATGCAGTAGTCTACTTGGTTGATGCATATGATAAGGAGAGACTCCCAGAATCAAAAAAGGAGCTGGATGCTCTTCTTTCTGATGACTCATTGGCGAATGTACCTTTTCTTGTACTAGGAAACAAGATCGACATACTTTATGCTGCATCAGAGGAGGAGTTAAGGTATCATATGGGCCTCACTAACTTCACCACAGGGAAAGGCAAGGTCAATCTTAAGGACTCCAATATTCGCCCTCTAGAGGTGTTCATGTGCAGTATTGTCCGCAAGATGGGGTATGGTGAAGGCTTTAAGTGGCTCTCTCAGTACATCAAATAG 582 0.4381 MFLLDWLYGILASLGLSQKEAKILFLGLDNAGKTTLLHMLRNERLVQHQPTQFPTSEELNIGKIKFKAFDLGGHQIARRVWRDYYTQVDAVVYLVDAYDKERLPESKKELDALLSDDSLANVPFLVLGNKIDILYAASEEELRYHMGLTNFTTGKGKVNLKDSNIRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1255 193 Gene3D - 1 193 IPR027417 -
Ssu1g1255 193 CDD Sar1 2 192 - -
Ssu1g1255 193 SMART arf_sub_2 4 193 - -
Ssu1g1255 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Ssu1g1255 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
Ssu1g1255 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Ssu1g1255 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Ssu1g1255 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Ssu1g1255 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Ssu1g1255 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Ssu1g1255 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 135 IPR005225 GO:0005525
Ssu1g1255 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Ssu1g1255 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Ssu1g1255 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Ssu1g1255 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Ssu1g1255 193 PANTHER GTP-BINDING PROTEIN SAR1A 1 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1255 Ssu-Chr1 27762786 27764954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1255 19 146 Miscellaneous Gene Families AT5G05670 31.690 7.28e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1255 K07953 - pda:103700957 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1255 1 27762786 27764954 Ssu1g1255 1 27762786 27764954 ECH
Ssu1g1255 1 27762786 27764954 Ssu7g1781 7 36292574 36294957 ECH
Ssu1g1255 1 27762786 27764954 Ssu4g0431 4 7032354 7035556 ECH
Ssu6g0387 6 6175947 6178270 Ssu1g1255 1 27762786 27764954 PCT