Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0936 ATGAACACAATGGAGAGAAGGATTGGCTATGACATGCTGGTGGCTTTGGTGACCCTTTTAGTTTTCTCATTGACTTGTGCCACTGTTTCATCATCAGGGCCAACGAAACTCCACGACCATGTGGAGCAATTCAGGAGGAATCTTCTTGCTGATGGCCTTGGTAGAACTCCTCCAATGGGGTGGAACAGTTGGAATCATTTTAGTTGTCAAATAAACGAAAAAATCATCAGAGAAACTGCTGATGCTCATGTTTCTACGGGTCTTTCCAAGCTTGGATACACCTATGTCAATATAGATGATTGTTGGGCTGAATTAAATAGGGATGCTAAGGGTAATCTGGTGgcaaaaaaatcaacatttccTTCTGGAATCAAAGCTCTTGCAGATTATGTTCACAGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTGGGTATTTTACGTGTAGTAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTCAAGATGCCAAGACTTTCGCATCATGGGGTATTGACTATTTGAAGTATGATAACTGTAACAATGATGGATCAAAACCAACTGATAGATACCCTATTATGACTCGGGCTTTAATGATGGCTGGTCGTCCAATCTTTTTCTCGCTATGTGaatgGGGAGACTTGCACCCAGCTTTATGGGGTGCTAAAGTGGGAAATAGCTGGAGAACTACTAATGACATTAATGATTCATGGGAAAGCATGATTTCCAGGGCAGACATGAATGAAGTTTATGCTGAGTATGCAAGACCTGGTGGTTGGAATGATCCTGACATGCTTGAGGTGGGAAATGGagggatgacaaaaaatgaatatattgttcACTTCAGTTTATGGGCCATTTCCAAGGCTCCTCTTCTTCTTGGCTGTGATGTTCGAAATATGACTAAAGAGACTATGGAGATAGTAGCAAATAAGGAAGTTATTGCTGTTAACCAAGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCTTGAGATTTGGGCAGGTCCTCTTTCAGGGTACAGGGTAGCTGTTGTGTTACTTAATCGTGGCCCTCGGAGAATTGCCATCACAGCCAATTGGGATGACATTGGTATTCCACCAAAAAGTGTTGTTGAAGCAAGAGACCTTTGGGAGCACAAGACATTGATGAGACCCTTTGTGGATAAATTGACTGCCACAGTAGATCCACATGCGTGTAAAATGTACGTGCTGAAGCCAGTGGCTTGA 1242 0.4106 MNTMERRIGYDMLVALVTLLVFSLTCATVSSSGPTKLHDHVEQFRRNLLADGLGRTPPMGWNSWNHFSCQINEKIIRETADAHVSTGLSKLGYTYVNIDDCWAELNRDAKGNLVAKKSTFPSGIKALADYVHSKGLKLGIYSDAGYFTCSKQMPGSLGHEFQDAKTFASWGIDYLKYDNCNNDGSKPTDRYPIMTRALMMAGRPIFFSLCEWGDLHPALWGAKVGNSWRTTNDINDSWESMISRADMNEVYAEYARPGGWNDPDMLEVGNGGMTKNEYIVHFSLWAISKAPLLLGCDVRNMTKETMEIVANKEVIAVNQDPLGVQGKKVRMEGDLEIWAGPLSGYRVAVVLLNRGPRRIAITANWDDIGIPPKSVVEARDLWEHKTLMRPFVDKLTATVDPHACKMYVLKPVA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0936 413 PRINTS Glycosyl hydrolase family 27 signature 163 180 IPR002241 GO:0004553|GO:0005975
Ssu3g0936 413 PRINTS Glycosyl hydrolase family 27 signature 51 70 IPR002241 GO:0004553|GO:0005975
Ssu3g0936 413 PRINTS Glycosyl hydrolase family 27 signature 128 149 IPR002241 GO:0004553|GO:0005975
Ssu3g0936 413 PRINTS Glycosyl hydrolase family 27 signature 87 102 IPR002241 GO:0004553|GO:0005975
Ssu3g0936 413 PRINTS Glycosyl hydrolase family 27 signature 190 208 IPR002241 GO:0004553|GO:0005975
Ssu3g0936 413 PRINTS Glycosyl hydrolase family 27 signature 276 297 IPR002241 GO:0004553|GO:0005975
Ssu3g0936 413 PRINTS Glycosyl hydrolase family 27 signature 255 274 IPR002241 GO:0004553|GO:0005975
Ssu3g0936 413 Pfam Alpha galactosidase A 56 320 IPR002241 GO:0004553|GO:0005975
Ssu3g0936 413 CDD GH27 57 320 IPR002241 GO:0004553|GO:0005975
Ssu3g0936 413 SUPERFAMILY (Trans)glycosidases 51 321 IPR017853 -
Ssu3g0936 413 Gene3D - 323 412 IPR013780 -
Ssu3g0936 413 ProSitePatterns Alpha-galactosidase signature. 92 108 IPR000111 GO:0004553|GO:0005975
Ssu3g0936 413 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 11 413 IPR002241 GO:0004553|GO:0005975
Ssu3g0936 413 PANTHER ALPHA-GALACTOSIDASE 11 413 - -
Ssu3g0936 413 Pfam Alpha galactosidase C-terminal beta sandwich domain 332 409 IPR041233 -
Ssu3g0936 413 Gene3D Aldolase class I 49 322 IPR013785 -
Ssu3g0936 413 SUPERFAMILY Glycosyl hydrolase domain 315 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0936 Ssu-Chr3 22293605 22296823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0936 46 409 Glycoside Hydrolase AT5G08370 67.582 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0936 K07407 - gmx:100804290 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0936 3 22293605 22296823 Ssu2g0917 2 46083197 46086360 PCT
Ssu2g0916 2 46072658 46075878 Ssu3g0936 3 22293605 22296823 PCT