Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0917 ATGGAGAGAAGTAAAATGTTGATGGCTTTTGTGATGACACTTATGTTTTGTTCGGTTTCCGCTTCATCAAGGCCATTCAACAATCGTGAGAGCCAAGATAGGAGAAATCTTCTTGCCAATGGCCTTGGTGCCACGCCTCCAATGGGGTGGAATAGCTGGAATCATTTTTACTGTAGACATAACGAAACAATCATCCGTGAAACAGCTGATGCCCTTGTTTCTTCGGGTCTTTCCAAGCTTGGATACATTTATGTTAACATAGATGATTGCTGGGGTGAAATAGCTCGGGACGGCGATgGTAATTTGGTAGCACATAAAACCAAATATCCTTCTGGCATCAAAGCTATTGCAGATTATGTTCATGGGAAGGGTCTTAAGCTTGGCATTTATTCAGATGCAGGGTATTTTACTTGTAGCAAAACGCAACCTGGTTCACTTGGTCATGAAGAGCAAGATGCCAATACTTTCGCATCGTGGGATGTTGATTATTTAAAGTACGACAATTGTGACAATGGTGGAATAAAGCCCCTTGATAGATACCCTATTATGACTCGAGCTTTGATAAAGGCGGGCCGTCCAATCTACTTCTCACTATGTGAATGGGGAGACATGCACCCTGCATTATGGGGTTATCAAGTGGGAAATAGCTGGAGAACTACCGATGACATTCAAGATAATTGGGcaagTATGCTTTCAAGGGCAGATGTGAATGAGGCATATGCTGATCTTGCAAGACCTGGTGGTTGGAATGATCCTGACATGCTCGAGATAGGAAATGGAGGGATGAAGAAATCTGAATATATTGTTCACTTCAGTTTATGGGCCATTTCCAAGGCCCCTCTTATTATTGGCTGTGATATTCGACATATGTCTGAAGACACTAAAGAGATACTATCAAATACGGAGGTTATTGCAGTTGACCAAGATCCACTTGGTATACAAGGTAAAAAGGTTAGGATGGAAGGCGCTCTCGAGATTTGGGCAGGTCCTCTTTCCGGATGCAGGGTGGCTGTTGTCTTGCTCAATAAAGGCCGTCGTCGTAAGGCCATTACTGCTCTATGGGATGATATTGGCCTTGACCCTACAAATGTTGTTGAAGCAAGAGACCTTTGGGAGCACAAGACATTGGAAAGAAAATTCGTGGGTTCATTGACTGCCACTGTTGAACCACATGCTTGCAAAATGTACTTGTTGAAGCCAATAGGTTGA 1209 0.4301 MERSKMLMAFVMTLMFCSVSASSRPFNNRESQDRRNLLANGLGATPPMGWNSWNHFYCRHNETIIRETADALVSSGLSKLGYIYVNIDDCWGEIARDGDGNLVAHKTKYPSGIKAIADYVHGKGLKLGIYSDAGYFTCSKTQPGSLGHEEQDANTFASWDVDYLKYDNCDNGGIKPLDRYPIMTRALIKAGRPIYFSLCEWGDMHPALWGYQVGNSWRTTDDIQDNWASMLSRADVNEAYADLARPGGWNDPDMLEIGNGGMKKSEYIVHFSLWAISKAPLIIGCDIRHMSEDTKEILSNTEVIAVDQDPLGIQGKKVRMEGALEIWAGPLSGCRVAVVLLNKGRRRKAITALWDDIGLDPTNVVEARDLWEHKTLERKFVGSLTATVEPHACKMYLLKPIG 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0917 402 Gene3D Aldolase class I 38 311 IPR013785 -
Ssu2g0917 402 Gene3D - 312 400 IPR013780 -
Ssu2g0917 402 SUPERFAMILY (Trans)glycosidases 39 310 IPR017853 -
Ssu2g0917 402 Pfam Alpha galactosidase C-terminal beta sandwich domain 321 398 IPR041233 -
Ssu2g0917 402 Pfam Alpha galactosidase A 45 309 IPR002241 GO:0004553|GO:0005975
Ssu2g0917 402 ProSitePatterns Alpha-galactosidase signature. 81 97 IPR000111 GO:0004553|GO:0005975
Ssu2g0917 402 CDD GH27 46 309 IPR002241 GO:0004553|GO:0005975
Ssu2g0917 402 PRINTS Glycosyl hydrolase family 27 signature 152 169 IPR002241 GO:0004553|GO:0005975
Ssu2g0917 402 PRINTS Glycosyl hydrolase family 27 signature 117 138 IPR002241 GO:0004553|GO:0005975
Ssu2g0917 402 PRINTS Glycosyl hydrolase family 27 signature 179 197 IPR002241 GO:0004553|GO:0005975
Ssu2g0917 402 PRINTS Glycosyl hydrolase family 27 signature 244 263 IPR002241 GO:0004553|GO:0005975
Ssu2g0917 402 PRINTS Glycosyl hydrolase family 27 signature 76 91 IPR002241 GO:0004553|GO:0005975
Ssu2g0917 402 PRINTS Glycosyl hydrolase family 27 signature 40 59 IPR002241 GO:0004553|GO:0005975
Ssu2g0917 402 PRINTS Glycosyl hydrolase family 27 signature 265 286 IPR002241 GO:0004553|GO:0005975
Ssu2g0917 402 PANTHER ALPHA-GALACTOSIDASE 6 401 - -
Ssu2g0917 402 SUPERFAMILY Glycosyl hydrolase domain 304 398 - -
Ssu2g0917 402 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 6 401 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0917 Ssu-Chr2 46083197 46086360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0917 35 398 Glycoside Hydrolase AT5G08370 65.385 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0917 K07407 - gmx:100789787 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0936 3 22293605 22296823 Ssu2g0917 2 46083197 46086360 PCT