Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0916 ATGGGGAGAAGTAAAATGTTGATGGTTGTTGTGATGACACTTAAGTTTTGTTTGGTTTCCGCTTCATCAAGGCTATTCAATAATCGTGAAAACCAAGATAGGAGAAATCTTCTTGCCAATGGCCTTGGTGCTACTCCTCCAATGGGGTGGAATAGCTGGAATCATTTTTACTGTGGACATAACGAAACAATCATCAGAGAAACAGCTGATGCCCTTGTTTCTTCGGGTCTTTCCAAGCTTGGATACATTTATGTTAACATAGATGATTGCTGGGGTGAAATAGCTCGAGACGGCGATgGTAATTTAGTAGCACATAAAACCAAATATCCTTCTGGCATCAAAGCTATTGCAGATTATGTTCATAGGAAAGGTCTTAAGCTTGGCATTTATTCAGATGCAGGGTATTATACTTGTAGCAAAACGCAACCTGGTTCACTTGGTCATGAAGAGCAAGATGCCAATACTTTCGCATCATGGGGTGTTGATTATTTAAAGTACGACAATTGTGACAATGGTGGAATAAAGCCCCTTGATAGATACCCTATTATGACTCGAGCTTTGAAGAAGGCGGGCCGTCCAATCTACTTCTCACTATGTGAATGGGGAGACATGCACCCTGCATTATGGGGTTATCGAGTGGGAAATGGCTGGAGAACTACCGATGACATTCAAGATAATTGGGcaagGGCAGATATGAATGAAGTTTACGCTGATCTTGCAAGACCTGGTGGTTGGAATGGCATGAATTTCACTACGCTTTATCCTGACATGCTCGAGATAGGAAATGGAGGGATGAAGAAATCTGAATATATTGTTCACTTCAGTTTATGGGCCATTTCCAAGGCCCCTCTTATTATTGGCTGTGATATTCGACATATGTCTGAAGACACTAAAGAGATACTATCAAATACGGAGGTTATTGCAGTTGACCAAGATCCACTTGGTATACAAGGTAAAAAGGTTAGGATGGAAGGCGCTCTCGAGATTTGGGCAGGTCCTCTTTCCGGATGCAGGGTGGCTGTTGTCTTGCTCAATAAATACCCTTATAGTATGGCCATTACTGCTCTATGGGATGATATTGGCCTTGACCCTACAAATGTTGTTGAAGCCAGAGACCTTTGGGAGCACAAGACATTGGAAAGACATTTTGCGGATTCATTAACTGTCACTGTTGGACCAAATGCTTGCAACATGTACGTGTTGAACCCAATAGGTTGA 1218 0.4195 MGRSKMLMVVVMTLKFCLVSASSRLFNNRENQDRRNLLANGLGATPPMGWNSWNHFYCGHNETIIRETADALVSSGLSKLGYIYVNIDDCWGEIARDGDGNLVAHKTKYPSGIKAIADYVHRKGLKLGIYSDAGYYTCSKTQPGSLGHEEQDANTFASWGVDYLKYDNCDNGGIKPLDRYPIMTRALKKAGRPIYFSLCEWGDMHPALWGYRVGNGWRTTDDIQDNWARADMNEVYADLARPGGWNGMNFTTLYPDMLEIGNGGMKKSEYIVHFSLWAISKAPLIIGCDIRHMSEDTKEILSNTEVIAVDQDPLGIQGKKVRMEGALEIWAGPLSGCRVAVVLLNKYPYSMAITALWDDIGLDPTNVVEARDLWEHKTLERHFADSLTVTVGPNACNMYVLNPIG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0916 405 PANTHER ALPHA-GALACTOSIDASE 23 404 - -
Ssu2g0916 405 PRINTS Glycosyl hydrolase family 27 signature 179 197 IPR002241 GO:0004553|GO:0005975
Ssu2g0916 405 PRINTS Glycosyl hydrolase family 27 signature 40 59 IPR002241 GO:0004553|GO:0005975
Ssu2g0916 405 PRINTS Glycosyl hydrolase family 27 signature 152 169 IPR002241 GO:0004553|GO:0005975
Ssu2g0916 405 PRINTS Glycosyl hydrolase family 27 signature 247 266 IPR002241 GO:0004553|GO:0005975
Ssu2g0916 405 PRINTS Glycosyl hydrolase family 27 signature 76 91 IPR002241 GO:0004553|GO:0005975
Ssu2g0916 405 PRINTS Glycosyl hydrolase family 27 signature 117 138 IPR002241 GO:0004553|GO:0005975
Ssu2g0916 405 PRINTS Glycosyl hydrolase family 27 signature 268 289 IPR002241 GO:0004553|GO:0005975
Ssu2g0916 405 CDD GH27 46 312 IPR002241 GO:0004553|GO:0005975
Ssu2g0916 405 SUPERFAMILY (Trans)glycosidases 39 313 IPR017853 -
Ssu2g0916 405 Pfam Alpha galactosidase A 45 312 IPR002241 GO:0004553|GO:0005975
Ssu2g0916 405 Gene3D Aldolase class I 38 314 IPR013785 -
Ssu2g0916 405 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 23 404 IPR002241 GO:0004553|GO:0005975
Ssu2g0916 405 Gene3D - 315 404 IPR013780 -
Ssu2g0916 405 Pfam Alpha galactosidase C-terminal beta sandwich domain 324 401 IPR041233 -
Ssu2g0916 405 ProSitePatterns Alpha-galactosidase signature. 81 97 IPR000111 GO:0004553|GO:0005975
Ssu2g0916 405 SUPERFAMILY Glycosyl hydrolase domain 314 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0916 Ssu-Chr2 46072658 46075878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0916 35 401 Glycoside Hydrolase AT5G08370 62.264 2.40e-172 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0916 K07407 - gmx:100789787 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0916 2 46072658 46075878 Ssu3g0936 3 22293605 22296823 PCT