Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0760 ATGACAGAGCTGCAATCGAAGCCCAAAACTGGCCCAGCTCCGGCTCCGGTTGTGGCATCAAACGACGCCGTTGCCAAGAAAGCTTCTGAAACAGAGGAATCCAAGGCTACTGCTGTTGCAGCCGAGAAGACACCAGTTCCTGCAAACAAACAAAGCTCAAGAGGATCCCTCGACAGAGATATCGCTCTGGCAGAagtagagaaagagaaaaagttgtCCTATGTGAAGGCATGGGAAGAAAGTGAAAAGGCCAAAGCAGAGAACAAAGCTCAAAAGCATCTATCTGCTGTTGCTGCTTGGGAAAACAGCAAGAAGGCAGCTCTTGAGGCTGAGCTGAAAAAGATTGAGGAACAACTGGAGAAAAAGAAAGCAGAATATGGTGAAAGAATGAAAAACAAGATATCCGTAGTTCACAAGGAAGCAGAGGAGAAGAGGGCAGGGATTGAAGCCAAGCGTGGTGAAGAGTTTCTGAAGACAGAGGAAATGGCTGCAAAATACCGTGCAACAGGAACCACTCCAAAGAAGACCTTAGGGTgcttttga 543 0.453 MTELQSKPKTGPAPAPVVASNDAVAKKASETEESKATAVAAEKTPVPANKQSSRGSLDRDIALAEVEKEKKLSYVKAWEESEKAKAENKAQKHLSAVAAWENSKKAALEAELKKIEEQLEKKKAEYGERMKNKISVVHKEAEEKRAGIEAKRGEEFLKTEEMAAKYRATGTTPKKTLGCF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0760 180 Pfam Remorin, C-terminal region 70 175 IPR005516 -
Ssu3g0760 180 Pfam Remorin, N-terminal region 12 66 IPR005518 -
Ssu3g0760 180 PANTHER OS02G0117200 PROTEIN 1 180 - -
Ssu3g0760 180 Coils Coil 83 132 - -
Ssu3g0760 180 MobiDBLite consensus disorder prediction 1 57 - -
Ssu3g0760 180 PANTHER CARBOXY-TERMINAL REGION REMORIN 1 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0760 Ssu-Chr3 18234574 18239319 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0760 - - gmx:100305679 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0760 3 18234574 18239319 Ssu7g0773 7 15569793 15571964 ECH
Ssu3g0760 3 18234574 18239319 Ssu2g2846 2 89491470 89494073 ECH
Ssu3g0760 3 18234574 18239319 Ssu3g0760 3 18234574 18239319 ECH
Ssu2g2846 2 89491470 89494073 Ssu3g0760 3 18234574 18239319 ECH
Ssu3g0760 3 18234574 18239319 Ssu4g2760 4 70555136 70559834 PCT