Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2958 ATGTCGGCTACTGATGTTGCTGTGAGACCGATTTGCAAAGAATCGGTGCATTGGCAAGGGCGTTGCCTTGGCTCTGGCGAATCAATCCTGATATATCTAACCGTAAACGGTGCTGTGACACCAATGCGAGTGTTGGAGTCTGATTCCATTGCTTCGGTGAAAATGAGGATTCAAACATGCAAAGGGATTGCAGGGAAGAAGCACAAGCTGGTATATGGTGGCAGAGAGCTTGCCCGCAAGGATGCACTCATCAAGGACTATGGTGTCACTGCTGGCAATGTTCTTCACTTGGTTCTCCGTCTCTCTGACATGATCTTCATTGTTGTCAGGACCACCTGTGGGGAGGAGTTTGAGTTTCAGATTGATCGGCATAGAAATGTGAGGTATCTTAAGCAACGCATTAAGAAGGGGAAAGGTTTTATTGATCTTGAGGGTCAAGAGCTTTTCTGTGCTGGGGAAGAGCTCCATGACCAGAGGCTATTCCGTGACATAGGCAGGACTGATGATGGTGTGATTCATTTGGTTGTTCAAAAATCGGCAAAGGTTAAGGCCAAACCGGTTCACAAGGATTTGGAGCTTTCGGTTGTTGCCGATGCTTCTGCTGTGGGAGAGAATCAGGTTACACCAAAGATACCACCTGGTGTTGATTTCTGGTTGGAACCAGTTTTTGTGAATCCTAAGGTcagtttttttcctttcctttggGGCATGATCGGCTCCACATTCGATGGCTTGAAGAAAGGAAATCACCCTATCAGGTCCTCCGAGGGCACAGGTGGGACTTACTTCATGCAAGATTCAGCAGGTATGGAGTATGTTTCAGTTTTCAAGCCCATTGATGAGGAGCCAATGGCGGTGAATAACCCGCAAGGGCTACCGGTTTCCTCTAATGGTGAAGGTCTGAAAAGAGGGACAAAGGTTGGAGAAGGAGCTATGAGAGAAGTTGCAGCTTATATATTAGATCATCCAAGGGCTGGCCCAAGGTTGGTGTCAGGTGAAGCAGTAGGCTTTGCTGGGGTTCCCCCAACTGTTATGGTCCAGTGCTTACACCAATCCTTTAACCACCCAGATGGGTTTGATTGCTCCTCAGAGCATTCCAAGGTGGGGTCACTGCAGATGTTTATGAACAATGATGGTAACTGTGAGGACCTTGGACCAGGGGCTTTTTCTGTGAAGGAGCTGCATAAGATCACCGTGCTTGACATAAGAATGGCTAATGCAGATAGGCATGCTGGGAATATATTGTTCAGAAAAGAGGCAGGTGGCCACACTTTGCTCATTCCCATTGATCATGGCTACTGTCTACCAGAGAAATTTGAGGATTGCACATTTGATTGGCTTTACTGGCCCCAAGCACGTCAGCCTTACTCTCCTGATACAGTTGATTATATCAAATCTCTGGATGCTGAGAAAGATATAGAGCTTCTGAAATATTACGGGTGGGATGTTCCGGTTGAGTGTGCGCGAACACTCCGCGTCTCCACAATGTTGTTGAAGAAAGGGGTTGAGAAAGGTCTCACTCCCTATGCCATTGGAAGCATTATGTGTAGGGAAAATTTGAACAAGGAATCTGTAATCGAGGAGATTATTTGTGAAGCCGAGGAATCATTGCTACCTGGCATGGGGGAATCTGTGTTTCTTGAATCAGTATCCCAGATCATGGATTCCCGCCTTGATAAGCTTTCAAGATAG 1692 0.4622 MSATDVAVRPICKESVHWQGRCLGSGESILIYLTVNGAVTPMRVLESDSIASVKMRIQTCKGIAGKKHKLVYGGRELARKDALIKDYGVTAGNVLHLVLRLSDMIFIVVRTTCGEEFEFQIDRHRNVRYLKQRIKKGKGFIDLEGQELFCAGEELHDQRLFRDIGRTDDGVIHLVVQKSAKVKAKPVHKDLELSVVADASAVGENQVTPKIPPGVDFWLEPVFVNPKVSFFPFLWGMIGSTFDGLKKGNHPIRSSEGTGGTYFMQDSAGMEYVSVFKPIDEEPMAVNNPQGLPVSSNGEGLKRGTKVGEGAMREVAAYILDHPRAGPRLVSGEAVGFAGVPPTVMVQCLHQSFNHPDGFDCSSEHSKVGSLQMFMNNDGNCEDLGPGAFSVKELHKITVLDIRMANADRHAGNILFRKEAGGHTLLIPIDHGYCLPEKFEDCTFDWLYWPQARQPYSPDTVDYIKSLDAEKDIELLKYYGWDVPVECARTLRVSTMLLKKGVEKGLTPYAIGSIMCRENLNKESVIEEIICEAEESLLPGMGESVFLESVSQIMDSRLDKLSR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2958 563 Pfam Phosphatidylinositol 3- and 4-kinase 257 510 IPR000403 -
Ssu2g2958 563 Gene3D - 30 106 - -
Ssu2g2958 563 ProSiteProfiles Ubiquitin domain profile. 105 181 IPR000626 GO:0005515
Ssu2g2958 563 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 563 IPR044571 -
Ssu2g2958 563 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 248 545 IPR000403 -
Ssu2g2958 563 SUPERFAMILY Ubiquitin-like 33 102 IPR029071 -
Ssu2g2958 563 Gene3D - 107 192 - -
Ssu2g2958 563 ProSiteProfiles Ubiquitin domain profile. 31 104 IPR000626 GO:0005515
Ssu2g2958 563 CDD Ubl_ubiquitin_like 107 175 - -
Ssu2g2958 563 Pfam Ubiquitin family 107 178 IPR000626 GO:0005515
Ssu2g2958 563 Pfam Ubiquitin family 36 101 IPR000626 GO:0005515
Ssu2g2958 563 SMART ubq_7 105 177 IPR000626 GO:0005515
Ssu2g2958 563 SMART ubq_7 29 100 IPR000626 GO:0005515
Ssu2g2958 563 SUPERFAMILY Protein kinase-like (PK-like) 404 561 IPR011009 -
Ssu2g2958 563 SUPERFAMILY Ubiquitin-like 101 178 IPR029071 -
Ssu2g2958 563 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2958 Ssu-Chr2 91081614 91083737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2958 1 562 Acyl Lipid Metabolism Gene Families AT5G24240 56.272 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2958 - - gmx:100787492 1026.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2958 2 91081614 91083737 Ssu2g2958 2 91081614 91083737 ECH
Ssu2g2958 2 91081614 91083737 Ssu4g2957 4 75636862 75639269 ECH
Ssu2g2958 2 91081614 91083737 Ssu4g0126 4 2139646 2141573 ECH
Ssu2g2958 2 91081614 91083737 Ssu5g3165 5 79922458 79924849 PCT