Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3165 ATGTCAATTGCTGAGTTTGCTTTGAGTTCAGTTTGCAAAGAGAAGGTGTATTGGGAAGGGCAACCAGGACATTGTTCTGGTGAGCCAATCTTGATTTACCTCACTGTGGATGGTGCTGTGACCCCAATGCGTGTGTTGGAGTCCGATTCCATTGCTTCGGTGAAGCTGAGGATTCAGCAGTGCAAAGGCTTCGTGGTGAAGAAGCAGAAGCTGGTTTTTGGTGGCAGAGAGCTGGCTCGCAATGGCACACTCATCAAGGAGTATGGTGTCACTGATGGCAACGTTCTTCACTTGGTTCTTCGCCTCTCTGATCTTCTCTTCATTGTTGTGAGGACCGTTTGTGGGAAGGAATTCGAGTTCCACATCGACAGGCACAGAAATGTGGGGTATCTGAAGCAACGCATTAGAAAGCAAGGGGAAGGTTTCGTTGATCTTGAGGATCAAGAGCTTTTCTGCAATGATGAGAAGCTCGATGACCAGAGGCTCTTCCATGACATATGCAAGAGTGATGATGATGtgattcatttattaattaagaaatcgGCTAAGGTTAGGACCACACCAATTCACAAGGATTTGAAGCTCTCGGTGGAGGCACCATGTGAGAGAGTGAAACATGTAGGAGAGAATAGGGTCAAGCATGTTCACATAGCAAGGGTGCCACCTGATGTAGGTTTCTGGTTGGAGCCAATTATTGTGAATCCTAAGATcaacttttttcctttcctttggGACATGATCGACTCCACGTTTGAAGGTTTGAAGAAAGGAAATCACCCTATTAGGTCCTCTGAGGGCACTGGAGGGACTTACTTCATGCAAGATTCAACAGGTCAGGAGCATGTTTCGGTTTTCAAGCCCCTGGATGAGGAACCAATGGCTCTGAACAACCCAAGAGGCCTTCCAAGTTCATCTAATGGTGAAGGTTTGAAAAGAGGGACAAAGGTTGGAGAAGGAGCCTTGAGGGAAGTTGCAGCTTACTTGTTGGATCATCCAAGGAGTGGGCCACGTTTGGTGTCAGGTGAAGCAGTGGGGTTTTCTGGTGTTCCCCCTACTGTTATGGTGCAGTGCTTGCACCATGAATTTAACCACCCAAATGGGTTCGCTTGCTCCTCAAAACATGTTAAGATTGGGTCACTGCAGAAGTTCATGAGTAATGATGGTAATTGTGAGGACATTGGACCCTGGGCTTTCCCAGTGGAGGAGGTACATAAGATTACTGTGCTTGATATAAGATTGGCTAATGCAGACAGGCATGCTGGGAATATATTGATCAGAAAGGAGGCAGATGGCCAGACAAAGCTCATTCCTATTGATCATGGCTATTGTCTACCAGATAAATTTGAAGATTGCACATTTGATTGGCTTTACTGGCCGCAAGCGCGTCAGCCTTACTCTCCTGATACAGTTGAATATATCAAATCCCTGGATGCTGAAAAAGACTTGGAACTTTTGAAATGTTATGGATGGGATATTCCACTTCAGTGTGCTAGAACATTTCGCATTTCCACAATGTTGCTGAAAAAAGGGGTTGAGAGAGGCCTTACTCCCTATGCTATTGGAAGCATTATGTGTCGGGAAAATTTGAACAAGGAATCTGTGATTGAAGAGATTATTGGGGAAGCCCAAGATTCCTTGCTTCCAGGCATGGAGGAGTCGGCATTTCTTGAAGCCATCTCCCAAACCATGGATTCCCGCCTTCATAAGCTTGCAAAATAG 1719 0.4479 MSIAEFALSSVCKEKVYWEGQPGHCSGEPILIYLTVDGAVTPMRVLESDSIASVKLRIQQCKGFVVKKQKLVFGGRELARNGTLIKEYGVTDGNVLHLVLRLSDLLFIVVRTVCGKEFEFHIDRHRNVGYLKQRIRKQGEGFVDLEDQELFCNDEKLDDQRLFHDICKSDDDVIHLLIKKSAKVRTTPIHKDLKLSVEAPCERVKHVGENRVKHVHIARVPPDVGFWLEPIIVNPKINFFPFLWDMIDSTFEGLKKGNHPIRSSEGTGGTYFMQDSTGQEHVSVFKPLDEEPMALNNPRGLPSSSNGEGLKRGTKVGEGALREVAAYLLDHPRSGPRLVSGEAVGFSGVPPTVMVQCLHHEFNHPNGFACSSKHVKIGSLQKFMSNDGNCEDIGPWAFPVEEVHKITVLDIRLANADRHAGNILIRKEADGQTKLIPIDHGYCLPDKFEDCTFDWLYWPQARQPYSPDTVEYIKSLDAEKDLELLKCYGWDIPLQCARTFRISTMLLKKGVERGLTPYAIGSIMCRENLNKESVIEEIIGEAQDSLLPGMEESAFLEAISQTMDSRLHKLAK 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3165 572 Pfam Ubiquitin family 36 102 IPR000626 GO:0005515
Ssu5g3165 572 Pfam Ubiquitin family 108 180 IPR000626 GO:0005515
Ssu5g3165 572 Gene3D - 34 104 - -
Ssu5g3165 572 Gene3D - 107 194 - -
Ssu5g3165 572 SUPERFAMILY Ubiquitin-like 102 180 IPR029071 -
Ssu5g3165 572 SUPERFAMILY Ubiquitin-like 34 103 IPR029071 -
Ssu5g3165 572 CDD Ubl_ubiquitin_like 108 177 - -
Ssu5g3165 572 Pfam Phosphatidylinositol 3- and 4-kinase 266 519 IPR000403 -
Ssu5g3165 572 ProSiteProfiles Ubiquitin domain profile. 32 101 IPR000626 GO:0005515
Ssu5g3165 572 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 1 571 - -
Ssu5g3165 572 SMART ubq_7 30 101 IPR000626 GO:0005515
Ssu5g3165 572 SMART ubq_7 106 179 IPR000626 GO:0005515
Ssu5g3165 572 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 257 554 IPR000403 -
Ssu5g3165 572 ProSiteProfiles Ubiquitin domain profile. 106 183 IPR000626 GO:0005515
Ssu5g3165 572 SUPERFAMILY Protein kinase-like (PK-like) 413 569 IPR011009 -
Ssu5g3165 572 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 571 IPR044571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3165 Ssu-Chr5 79922458 79924849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3165 1 571 Acyl Lipid Metabolism Gene Families AT5G24240 57.739 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3165 - - gmx:100809172 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2958 2 91081614 91083737 Ssu5g3165 5 79922458 79924849 PCT