Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0126 ATGTCATCCGCCGGTGTCAGTACTCTTAGTGTGGTTCCCACTGAGCCATTGTTGTCACCAAAGGCATTCCCTTTCCCATCACACTTGTCTTGGGAAGATAAATCCATTTTCATATACCTCTCCTTTTCGGGCTTATTGACTCCAATCCGTGTTATGGAGTGGGATACCATTGAGTCTGTGAAATTCAAAATCCAGAGGTGCGAAAGCCTTCCATTTTTAACAAACAAGCAGAAGTTGGTTTATGCTGGCCGAGAGCTCGCGCGAAGTGATTCGCAGCTGAAGGACTATGGAGTAACCGATGGGAATGTTTTGCATTTGATAATCAAACTGTCAGATCTTCAGGTAATCAATGTGAAAACCTCTTGTGGGAAGGAATTCACGTTTCAGGTCGAAAGAGGCAGGGATGTTGGTTACGTCAAGCGACGGATTGCCAAAAGGGAGAAACAGTTTGATGATCCTGAGCAGCAGGAGCTTGTGTGCAATGGGGAAAGGCTTGAGGACCAGAGGCTTATTGATGATATCTGCTGCAAACATAATGATGCAGTGGTACATGTGTTTGTTAGAAAAAAGCATGCTAAAGTTCAGAGGAGATCCCTTGAGTTGTCCTTTGTAGCGACAGATTTGATTGatcagaaaaaaaatgatgtcaaTGGAAGTACTTATAGGACAAGTTATGATGTTGGTAAAGAAGATACTATTAGGAAGTTTGATGCCATTCAAAGAGGTGTGCCAAGAAAGCCTCCCGATAGAGACTTTATTTTGGAGCCAGTTATTATTAACCCTAGAATTGAATTAGCTCCAGGTATTTGGAATATGGTGAACTCTACATATGATGGACTAGACAGTGGAAACTATCCAATCAAATCTGCCGAGGGTACAGGAGGAGCTTACTTTATGCTTGATTCAGCAGGGCAAAAGTATGTGTCTGTTTTCAAGCCTATTGATGAAGAGCCAATGGCTGTAAATAACCCTCGAGGTCTTCCTTTGTCAGTAGATGGTGAAGGCTTAAAAAAGGGTACAAGAGTTGGTCAAGGAGCATTCAGGGAAGTTGCAGCCTATGTTCTAGACCATCCATTGAGTGGGCGCCGCACATTATTTGGTGATGAGAAGGGCTTTGCTGGTGTTCCCCCAACATTGATGGTTAAGTGCTTGCATAAAGCATTTAACTATCCTAGAGAATTGACTCCTAAGATTGGCTCCTTGCAAATGTTCACGGAAAATAGTGGAAGTTGTGAAGATATGGGCCCTGGCCCTTTCCCAGTCAAGGAAGTACATAAAATTACTGTTTTGGACATAAGACTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGCTCAGCACAGAGAAGGACAACAAGCAGTCTGTTCTGATTCCAATTGATCATGGATACTGCTTGCCCACAAGCTTTGAAGATTGTACCTTTGAGTGGCTTTACTGGCCCCAAGCTCGCCAGCCATACTCCCCAGAAACTATTGACTACATAAAATCACTGGATGCTGAAGAAGATATTGCCCTTCTAAAGTTTCATGGATGGGATCTGCCAGTTGATTGTGCCCGCACTTTTAGGATCTCAACCATGCTTTTGAAGAAAGGGGTAGAGAGAGGACTGACCCCCTTTGCCATTGGAAGCCTGATGTGCAGGGAATCCTTGAACAAGGAATCTATGATAGAAGAAATAGTACAAGCAGCACTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTGGATGCTGTTTCCCAAATCATGGATCTGCGCCTTGATGAGATCGTCACATCTCGTTTATAA 1794 0.432 MSSAGVSTLSVVPTEPLLSPKAFPFPSHLSWEDKSIFIYLSFSGLLTPIRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDSQLKDYGVTDGNVLHLIIKLSDLQVINVKTSCGKEFTFQVERGRDVGYVKRRIAKREKQFDDPEQQELVCNGERLEDQRLIDDICCKHNDAVVHVFVRKKHAKVQRRSLELSFVATDLIDQKKNDVNGSTYRTSYDVGKEDTIRKFDAIQRGVPRKPPDRDFILEPVIINPRIELAPGIWNMVNSTYDGLDSGNYPIKSAEGTGGAYFMLDSAGQKYVSVFKPIDEEPMAVNNPRGLPLSVDGEGLKKGTRVGQGAFREVAAYVLDHPLSGRRTLFGDEKGFAGVPPTLMVKCLHKAFNYPRELTPKIGSLQMFTENSGSCEDMGPGPFPVKEVHKITVLDIRLANADRHAGNILLSTEKDNKQSVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPETIDYIKSLDAEEDIALLKFHGWDLPVDCARTFRISTMLLKKGVERGLTPFAIGSLMCRESLNKESMIEEIVQAALDSVLPGTSEATLLDAVSQIMDLRLDEIVTSRL 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0126 597 CDD Ubl_ubiquitin_like 116 186 - -
Ssu4g0126 597 Pfam Phosphatidylinositol 3- and 4-kinase 292 541 IPR000403 -
Ssu4g0126 597 SMART ubq_7 114 188 IPR000626 GO:0005515
Ssu4g0126 597 SMART ubq_7 36 109 IPR000626 GO:0005515
Ssu4g0126 597 SUPERFAMILY Ubiquitin-like 107 190 IPR029071 -
Ssu4g0126 597 ProSiteProfiles Ubiquitin domain profile. 116 173 IPR000626 GO:0005515
Ssu4g0126 597 Pfam Ubiquitin family 42 110 IPR000626 GO:0005515
Ssu4g0126 597 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Ssu4g0126 597 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 595 IPR044571 -
Ssu4g0126 597 SUPERFAMILY Protein kinase-like (PK-like) 433 594 IPR011009 -
Ssu4g0126 597 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 595 - -
Ssu4g0126 597 Gene3D - 115 202 - -
Ssu4g0126 597 Gene3D - 31 114 - -
Ssu4g0126 597 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 283 576 IPR000403 -
Ssu4g0126 597 SUPERFAMILY Ubiquitin-like 33 110 IPR029071 -
Ssu4g0126 597 ProSiteProfiles Ubiquitin domain profile. 55 109 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0126 Ssu-Chr4 2139646 2141573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0126 33 591 Acyl Lipid Metabolism Gene Families AT5G24240 55.929 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0126 - - gmx:100791631 1111.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0126 4 2139646 2141573 Ssu4g0126 4 2139646 2141573 ECH
Ssu4g2957 4 75636862 75639269 Ssu4g0126 4 2139646 2141573 ECH
Ssu2g2958 2 91081614 91083737 Ssu4g0126 4 2139646 2141573 ECH
Ssu4g0126 4 2139646 2141573 Ssu4g2957 4 75636862 75639269 PCT