Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2674 ATGTACAGAGAGCGAGGAGGCGCGGGATCCAAGTCGGAGGTAACTTCCGTTGATCGGAAGCGAATCAACGACGTCCTCGATAAACAGCTCGAACGATCCTCGCCGTCCACGTCCAGAGCCGCCGCCATCAACGGCAAGGACCGGTCCTCCTCTTCCCTTTTAGCCGCCGCCAAGGACTCTCGCTCCGCCTCCGCCCCTATCTCCAAGAATTCCAACGCTTCCGATGAGGAATCTGAAACAGACAGCGAAGAGTCTGATGTTAGTGGTTCTGATGGAGATGACACGTCTTGGATCTCGTGGTTCTGCAATTTGAGAGGAAATGAATTCTTCTGCGAGGTGGACGATGATTACATCCAGGATGACTTCAATCTGTGCGGATTAAGCAGTCAAGTGCCTTACTATGATTATGCTCTGGATTTGATTTTGGATGTTGAATCCTCCCATGGTGACATGTTTACTGAGGAGCAGAATGAGTTAATTGAATCAGCTGCTGAGATGCTTTATGGTCTGATTCATGCCCGGTACATATTGACAAGCAAAGGAATGGCTGCAATGCTGGACAAGTACAAGAACTATGATTTTGGCAGATGCCCAAGAGTTTACTGTTCTGGACAACCTTGTATTCCAGTTGGTCAGTCAGACATCCCTAGGTCCAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGACATTTACTATCCTCGGTCCAACTGTTCGGTCGCTGTATATCTGAAGCTTAAGGACAGTTTTGGGACCTTTGGACCTGTTCAAGTTTAG 777 0.4826 MYRERGGAGSKSEVTSVDRKRINDVLDKQLERSSPSTSRAAAINGKDRSSSSLLAAAKDSRSASAPISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCIPVGQSDIPRSSTVKIYCPRCEDIYYPRSNCSVAVYLKLKDSFGTFGPVQV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2674 258 Pfam Casein kinase II regulatory subunit 96 239 IPR000704 GO:0005956|GO:0019887
Ssu2g2674 258 SMART CK_II_beta_2 96 245 IPR000704 GO:0005956|GO:0019887
Ssu2g2674 258 SUPERFAMILY Casein kinase II beta subunit 94 238 IPR035991 GO:0005956|GO:0019887
Ssu2g2674 258 ProSitePatterns Casein kinase II regulatory subunit signature. 197 228 IPR000704 GO:0005956|GO:0019887
Ssu2g2674 258 Gene3D - 194 245 - -
Ssu2g2674 258 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 89 193 IPR016149 GO:0005956|GO:0019887
Ssu2g2674 258 PRINTS Casein kinase II regulatory subunit family signature 168 189 IPR000704 GO:0005956|GO:0019887
Ssu2g2674 258 PRINTS Casein kinase II regulatory subunit family signature 215 236 IPR000704 GO:0005956|GO:0019887
Ssu2g2674 258 PRINTS Casein kinase II regulatory subunit family signature 193 214 IPR000704 GO:0005956|GO:0019887
Ssu2g2674 258 PRINTS Casein kinase II regulatory subunit family signature 96 112 IPR000704 GO:0005956|GO:0019887
Ssu2g2674 258 PRINTS Casein kinase II regulatory subunit family signature 113 127 IPR000704 GO:0005956|GO:0019887
Ssu2g2674 258 PANTHER CASEIN KINASE II SUBUNIT BETA-2 1 240 - -
Ssu2g2674 258 MobiDBLite consensus disorder prediction 1 92 - -
Ssu2g2674 258 MobiDBLite consensus disorder prediction 14 28 - -
Ssu2g2674 258 MobiDBLite consensus disorder prediction 29 73 - -
Ssu2g2674 258 PANTHER CASEIN KINASE II SUBUNIT BETA 1 240 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2674 Ssu-Chr2 86940347 86942498 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2674 K03115 - gmx:100799304 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2674 2 86940347 86942498 Ssu2g2674 2 86940347 86942498 ECH
Ssu2g2674 2 86940347 86942498 Ssu6g1689 6 28444284 28446441 PCT
Ssu6g1687 6 28425628 28428381 Ssu2g2674 2 86940347 86942498 PCT