Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1687 ATGAATGATTacaaaggaagagaaggagaaagtgTTGTTGGTCGGAAGCGAATCAAGGAGAAGCAACAACCCTGTCCTTCCACAAGACCAATCAACAACCACCGTCGCTGTGCCTCCCTCCCTAACGCTCAACACGAGGAATCTGAATCAGATATTGAGGGATCTGATGTTAGTGTTTCTGAAGGGGATGACACATCTTGGATCTCATGGTTTTGCAATTTGAGAGGAAACGAATTCTTTTGCGAAGTTGACGATGATTTCGTACAAGATGATTTCAACCTCTGTGGATTAAGTAGTCAAGTGCCTTACTATGATTATGCACTTGATTTAATTTTGGATGTTGAGTCCTCCCACGGAGACATGTTCACAGAGGAGCAAAATGAGTTAATTGAATCTGCAGCAGAGATGCTTTATGGTCTGATTCATGCCCGGTACATTTTGACAAGCAAAGGAATGGCTGCAATgCTGCACAAGTACAAAAACTATGACTTTGGCAGATGTCCAAGAGTTTACTGCTCTGGACAACCCTGCCTTCCAGTTGGCCAGTCAGATATTCCTAGGTCAAGTACTGTAAAAATATATTGCCCCAGGTGTGAAGACATGTACTACCCAAAGTCCACGTATCAAGACATTGATGGAGCTTATTTTGGAGCTACATTTCCTCACCTCTTTCTGATGACTTATGGTAATATGAAGCCACATAAGCCACCACAGCACTATGTACCTAGAGTCTTTGGTTTCAAAGTTCACAAGCCCTGA 759 0.4137 MNDYKGREGESVVGRKRIKEKQQPCPSTRPINNHRRCASLPNAQHEESESDIEGSDVSVSEGDDTSWISWFCNLRGNEFFCEVDDDFVQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLHKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDMYYPKSTYQDIDGAYFGATFPHLFLMTYGNMKPHKPPQHYVPRVFGFKVHKP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1687 252 MobiDBLite consensus disorder prediction 25 39 - -
Ssu6g1687 252 PANTHER CASEIN KINASE II SUBUNIT BETA-2 18 251 - -
Ssu6g1687 252 SUPERFAMILY Casein kinase II beta subunit 64 251 IPR035991 GO:0005956|GO:0019887
Ssu6g1687 252 SMART CK_II_beta_2 66 248 IPR000704 GO:0005956|GO:0019887
Ssu6g1687 252 MobiDBLite consensus disorder prediction 1 59 - -
Ssu6g1687 252 ProSitePatterns Casein kinase II regulatory subunit signature. 167 198 IPR000704 GO:0005956|GO:0019887
Ssu6g1687 252 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 59 163 IPR016149 GO:0005956|GO:0019887
Ssu6g1687 252 PANTHER CASEIN KINASE II SUBUNIT BETA 18 251 IPR000704 GO:0005956|GO:0019887
Ssu6g1687 252 Gene3D - 164 237 - -
Ssu6g1687 252 MobiDBLite consensus disorder prediction 1 23 - -
Ssu6g1687 252 Pfam Casein kinase II regulatory subunit 66 248 IPR000704 GO:0005956|GO:0019887
Ssu6g1687 252 PRINTS Casein kinase II regulatory subunit family signature 83 97 IPR000704 GO:0005956|GO:0019887
Ssu6g1687 252 PRINTS Casein kinase II regulatory subunit family signature 138 159 IPR000704 GO:0005956|GO:0019887
Ssu6g1687 252 PRINTS Casein kinase II regulatory subunit family signature 185 206 IPR000704 GO:0005956|GO:0019887
Ssu6g1687 252 PRINTS Casein kinase II regulatory subunit family signature 163 184 IPR000704 GO:0005956|GO:0019887
Ssu6g1687 252 PRINTS Casein kinase II regulatory subunit family signature 66 82 IPR000704 GO:0005956|GO:0019887
Ssu6g1687 252 PRINTS Casein kinase II regulatory subunit family signature 212 229 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1687 Ssu-Chr6 28425628 28428381 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1687 K03115 - gmx:100789357 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1687 6 28425628 28428381 Ssu6g1687 6 28425628 28428381 ECH
Ssu6g1687 6 28425628 28428381 Ssu2g2674 2 86940347 86942498 PCT