Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1689 ATGTACAACGAGCGAGGAGGAGTTTCGGTTTCTGTTTCTTCCTCCAAATCGGAGGATCGCAAGCGAATCAACGACGTCCTCGACAAGCACCTCGAGCGATCCTCTCCCTCCACTTCTCGCCCCATCAACCCTCGCTCCAAAAATTCCAACCTCCAAGAGGAATCCGAAACAGAGAGCGAAGAGTCCGATGTTAGCGGTTCCGACGGCGATGACACCTCCTGGATCTCGTGGTTCTGCAATCTCAGGGGAAACGAGTTCTTTTGCGAGGTGGATGATGATTACATCCAAGACGACTTTAACCTCTGTGGGTTGAGCAGCCAAGTGCCCTACTATGATTATGCCCTTGATTTAATTCTCGATGTTGAGTCATCCCATGGTGACACGTTCACGGAGGAACAGAATGAGCTGATCGAGTCGGCAGCGGAAATGCTTTACGGTCTCATTCATGCCCGATATGTGTTGACCAGCAAAGGAATGGCTGCCATGCTTGACAAATACAAGAACTATGATTTCGGCAGATGCCCAAGAGTTTACTGCTCTGGACAACCCTGCCTTCCGGTTGGTCAATCCGACATTCCTAGGTCAAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGATCTTTACTACCCTCGTTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACAACATTTCCACACCTCTTCTTGATGAGTTATGGACAACTGAAGCCACAGAAACCATCACAAGGCTATGTTCCGAGAGTTTTTGGGTTCAAAATTCACAAGCCATAA 783 0.4789 MYNERGGVSVSVSSSKSEDRKRINDVLDKHLERSSPSTSRPINPRSKNSNLQEESETESEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDTFTEEQNELIESAAEMLYGLIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMSYGQLKPQKPSQGYVPRVFGFKIHKP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1689 260 PANTHER CASEIN KINASE II SUBUNIT BETA 1 44 IPR000704 GO:0005956|GO:0019887
Ssu6g1689 260 PRINTS Casein kinase II regulatory subunit family signature 90 104 IPR000704 GO:0005956|GO:0019887
Ssu6g1689 260 PRINTS Casein kinase II regulatory subunit family signature 145 166 IPR000704 GO:0005956|GO:0019887
Ssu6g1689 260 PRINTS Casein kinase II regulatory subunit family signature 170 191 IPR000704 GO:0005956|GO:0019887
Ssu6g1689 260 PRINTS Casein kinase II regulatory subunit family signature 220 237 IPR000704 GO:0005956|GO:0019887
Ssu6g1689 260 PRINTS Casein kinase II regulatory subunit family signature 73 89 IPR000704 GO:0005956|GO:0019887
Ssu6g1689 260 PRINTS Casein kinase II regulatory subunit family signature 192 213 IPR000704 GO:0005956|GO:0019887
Ssu6g1689 260 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 66 170 IPR016149 GO:0005956|GO:0019887
Ssu6g1689 260 ProSitePatterns Casein kinase II regulatory subunit signature. 174 205 IPR000704 GO:0005956|GO:0019887
Ssu6g1689 260 MobiDBLite consensus disorder prediction 1 69 - -
Ssu6g1689 260 MobiDBLite consensus disorder prediction 15 35 - -
Ssu6g1689 260 PANTHER CASEIN KINASE II SUBUNIT BETA 46 259 IPR000704 GO:0005956|GO:0019887
Ssu6g1689 260 Pfam Casein kinase II regulatory subunit 73 256 IPR000704 GO:0005956|GO:0019887
Ssu6g1689 260 PANTHER CASEIN KINASE II SUBUNIT BETA 1 44 - -
Ssu6g1689 260 MobiDBLite consensus disorder prediction 36 50 - -
Ssu6g1689 260 PANTHER CASEIN KINASE II SUBUNIT BETA 46 259 - -
Ssu6g1689 260 SMART CK_II_beta_2 73 256 IPR000704 GO:0005956|GO:0019887
Ssu6g1689 260 SUPERFAMILY Casein kinase II beta subunit 71 259 IPR035991 GO:0005956|GO:0019887
Ssu6g1689 260 Gene3D - 171 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1689 Ssu-Chr6 28444284 28446441 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1689 K03115 - gmx:100793573 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2674 2 86940347 86942498 Ssu6g1689 6 28444284 28446441 PCT