Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1807 ATGGACTCGTCTAAGAGACTTGCATTCTCGGAACCCTTTATGTCTCAGAGGAGAAAGGTGATTTCTGGGTTCAGTTTAGGTGTTGGAGTTTCTCTCCTTTTCCTCACTCTTCTCTTGCTCAACAACACTTCCCTCACCGTTCCCAAGGTTCAAGTCTTTCTCCAAGGATCTGATTCAAATTCGTCATTTTCTTGGCATTTTCCCTTCTCAACTcgctcctcctcttcttcttccgcTTCCAGCAGTGGTTCCGTGAGTTCTCTGCATAGGGTTGAAGTGAACGTGTCAGGGGAGGGTTTGGGGAAGACCCTGTTGGGGAATCTTAATGGGACTCAGAAAAATGCAAGCTTGCATTCTGGGCAAGAGGAACGTAAGCATTGTTGTTCTTTGAAGAATGTTACTTTGTCGGGGAAGGAAAATGCGCACGTGGGAAATTCGTCATGCAGTGGTGACGGTGTGGGAAAGTGTGAAGAGGGGTTGGTTAAGGAAAGTGATAATGCTAGTGTTGGTAGTTTCCGTGGGGAGTGTGACATCTTTGATGGGAGATGGGTGAGGGATGAGTCGAAGCCGTACTATCCATTGGGGTCTTGTCCCCACATCGATAGGGATTTTGATTGCCATCTTAATGGGAGGCCTGATAGTGAGTATGTGAAGTGGAAATGGCAGCCCAATGGGTGTGACATTCCAAGTTTGAATGCAACTGATTTTTTGGAAAAGTTGCGTGGACAGAAGCTGGTTTTTGTGGGGGATTCACTTAACAGGAACATGTGGGAGTCCATGGTGTGTATCCTACGACAAAGCGTCAAGGACAAGAAAcgtgtttttgaaatttcaggaaaaacagaatttaagaAGAAAGGTGTCTATGCTTTTAGATTTGAGGATTATAATTGTTCAGTAGATTTTGTTAGTTCACCATTCATTGTTCAAGAGTCAACTTTCAAAGGCATAAATGGGTCCTTTGAGACATTAAGATTGGATTTGATGGACCAGACAACTACCACCTATCATGATGCTGATATCATAGTCTTCAATACAGGCCATTGGTGGACCCACGAGAAAACATCTCGGGGAGAAGACTATTATCAAGTAGGCAACCATGTATACCCCAGACTAAAAGTTCTGGATGCATATACAAGGGCATTGACCACTTGGGCTAAATGGATCGACAACAATATTGATGCCAATCGAACTCAGGTTTTCTTCAGAGGATACTCAGTAACCCATTTCAGGCGTGGACAATGGAATTCAGGAGGACAGTGCCACAAAGAAACCGAACCAATATCTAATGCAAAGCACTTACGCAAGTACCCCTCAAAAATGAGGGCTTTTGAGCATGTCATCCCAAAGATGAAAACCCCAGTGATATATATGAACATTAGTAGGCTTACAGATTACAGAAAAGATGGACACCCTTCTATACACAGAATGGAGTATAAGACAGCAGAAGAACGGGCCTCTGCTGAACTACACCAAGATTGCAGTCATTGGTGTTTGCCTGGAGTACCTGATACTTGGAATGAGTTACTCTACGCTTCTCTCTTGAAATATGGTAAAGGTCATTGGAAAAGCTGA 1575 0.4216 MDSSKRLAFSEPFMSQRRKVISGFSLGVGVSLLFLTLLLLNNTSLTVPKVQVFLQGSDSNSSFSWHFPFSTRSSSSSSASSSGSVSSLHRVEVNVSGEGLGKTLLGNLNGTQKNASLHSGQEERKHCCSLKNVTLSGKENAHVGNSSCSGDGVGKCEEGLVKESDNASVGSFRGECDIFDGRWVRDESKPYYPLGSCPHIDRDFDCHLNGRPDSEYVKWKWQPNGCDIPSLNATDFLEKLRGQKLVFVGDSLNRNMWESMVCILRQSVKDKKRVFEISGKTEFKKKGVYAFRFEDYNCSVDFVSSPFIVQESTFKGINGSFETLRLDLMDQTTTTYHDADIIVFNTGHWWTHEKTSRGEDYYQVGNHVYPRLKVLDAYTRALTTWAKWIDNNIDANRTQVFFRGYSVTHFRRGQWNSGGQCHKETEPISNAKHLRKYPSKMRAFEHVIPKMKTPVIYMNISRLTDYRKDGHPSIHRMEYKTAEERASAELHQDCSHWCLPGVPDTWNELLYASLLKYGKGHWKS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1807 524 Pfam PMR5 N terminal Domain 175 227 IPR025846 -
Ssu2g1807 524 PANTHER PMR5/CAS1P GDSL/SGNH-LIKE ACYL-ESTERASE FAMILY PROTEIN 11 522 - -
Ssu2g1807 524 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 11 522 IPR029962 GO:0016413
Ssu2g1807 524 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 228 512 IPR026057 GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1807 Ssu-Chr2 68947244 68951445 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1807 - - gmx:100804622 926.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1807 2 68947244 68951445 Ssu2g1807 2 68947244 68951445 ECH
Ssu2g1807 2 68947244 68951445 Ssu5g1101 5 35057310 35062450 PCT
Ssu6g1472 6 24163880 24167407 Ssu2g1807 2 68947244 68951445 PCT