Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1101 ATGCATGTTCTTTTTTCTGTGAAGAGAGTCGCGTTCTCTGAACCGTTTCTTTCACATAGAAGAAGACTTTTTTCTTGGTTCAGTTTAGGTGTTGCAGCTTCTCTTGTTTTGTTGTCCCTCTTCCTTCTCAGTAACTCCCTCAGGGTTCCCAAAGTTGCAGTCTTTGTTCCACAACTTGAAACTGTTACTAGTGCAAACTCTTCGTTTGGTCCTTGCCCCTTGTCTTCTTTCAACACTAACCGCTCTTCTTCCACTAAAAACAACACTTCTGGTACTTTAAAGTCTGATGGGTCACAGAGTTCTGTGCAGAGAATTGAAGAAGGAAGTGTTGTTGTGGATATAACTCACGCAGTGAAAGTGAATAATGTGTCAGATATTGTACCAGATGAAAACATGAAGAGTGTACCTGAGGGGAGGGGTTTGGAGAATTCTAGTTTTACTTCTAATTTGTTGTCAGAGAGTAACAATGGAAAGCATGAAGGGGATTTGGTTGGGGAAAAGGATGTAAAGAATGTAACTGTCACTCATACTGAGAAAATGCATGTTGGTTTATTTGAGAACTGTGACATTTTTGATGGAAAGTGGGTAAGGGATGATTCAAAGCCATACTATCCTTTAGGGTCTTGTCCCCTCATTGATAGAGATTTTGATTGTCACCGTAATGGGAGGCCCGATGCTGAATATGTTAAATGGAGGTGGCAGCCAAATGGGTGTAAAATTCCAAGTTTGAATGCAACTGATTTTCTGGAGAGGTTACGCGGACAGAGGCTGGTTTTTGTGGGGGATTCACTGAACAGGAACATGTGGGAGTCACTTGTATGCATTCTCCGTCAAAGCATAGGGAGCAAGAAAAGGGTTTTTGAAATTTCAGGAAAAAGGGAATTTAAGAAGAAAGGTGTCTATTCTTTTAGATTTGAGGATTACAATTGTTCGGTGGATTTTGTTGTTTCACCATTCGTTGTTCAAGAGTCAACTTTCAAGGGCAAAAATGGGTCATTTGACACGTTAAGATTGGATTTGATGGACCGGACTACGACCAGGTACTGGGATGCTAATGTCATAGTCTTCAACACAGGCCATTGGTGGACCCATGATAAAACATCAAAAGGAGAAGATTATTATCAAGAAGGAAACCATGTATACCCAAGACTTGAGGTTCTGGATGCATATACGAGGGCCTTGACCACTTGGGCTAAATGGGTTGACCGAAAAATTAATACCAATCAAACACAGGTTTTCTTCAGAGGATACTCAATTACCCATTTCTGGGGTGGACAATGGAACTCAGGAGGACAGTGCCACAAAGAAACTGAGCCAATATTCAATGAAACTTACTTACAAAAGTACCCTTCAAAAATGTGGGCTCTAGAAAATGTCATCCAACAAATGGAAACCCCAGTAGTATATGAATCGAGGGAAGGAAATAGGATAGTGGATTGGCTTGCCAATTCTTCCCATTGGTTTGAGCTTGGAGTCACTTTCTTAAGCCAAAGCTTATCTGTTCCTATGGAGAATGCTTCTCTGCTTCATGCCACTCAGAGAATTATGTTTCTCCATATATACCCTTTGTGA 1572 0.409 MHVLFSVKRVAFSEPFLSHRRRLFSWFSLGVAASLVLLSLFLLSNSLRVPKVAVFVPQLETVTSANSSFGPCPLSSFNTNRSSSTKNNTSGTLKSDGSQSSVQRIEEGSVVVDITHAVKVNNVSDIVPDENMKSVPEGRGLENSSFTSNLLSESNNGKHEGDLVGEKDVKNVTVTHTEKMHVGLFENCDIFDGKWVRDDSKPYYPLGSCPLIDRDFDCHRNGRPDAEYVKWRWQPNGCKIPSLNATDFLERLRGQRLVFVGDSLNRNMWESLVCILRQSIGSKKRVFEISGKREFKKKGVYSFRFEDYNCSVDFVVSPFVVQESTFKGKNGSFDTLRLDLMDRTTTRYWDANVIVFNTGHWWTHDKTSKGEDYYQEGNHVYPRLEVLDAYTRALTTWAKWVDRKINTNQTQVFFRGYSITHFWGGQWNSGGQCHKETEPIFNETYLQKYPSKMWALENVIQQMETPVVYESREGNRIVDWLANSSHWFELGVTFLSQSLSVPMENASLLHATQRIMFLHIYPL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1101 523 MobiDBLite consensus disorder prediction 129 163 - -
Ssu5g1101 523 MobiDBLite consensus disorder prediction 76 100 - -
Ssu5g1101 523 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 14 470 IPR029962 GO:0016413
Ssu5g1101 523 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 240 467 IPR026057 GO:0016740
Ssu5g1101 523 PANTHER PMR5/CAS1P GDSL/SGNH-LIKE ACYL-ESTERASE FAMILY PROTEIN 14 470 - -
Ssu5g1101 523 Pfam PMR5 N terminal Domain 187 239 IPR025846 -
Ssu5g1101 523 MobiDBLite consensus disorder prediction 138 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1101 Ssu-Chr5 35057310 35062450 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1101 - - gmx:100798751 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1101 5 35057310 35062450 Ssu5g1101 5 35057310 35062450 ECH
Ssu2g1807 2 68947244 68951445 Ssu5g1101 5 35057310 35062450 PCT