Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1472 ATGGAAGCTGTGGGTGGAAGCACTGTTTGGGTCACTTCCTCTCTTGCACGCTCACCAACACTACCCAAGACCATTATCCCTCTGTTACACGCCACTCACCAACACCTAACAGCATTTCCTTCACAATCCCATCTATTCTCGCATCACTCTCCACGCTATGCTAAAACCCTCCGCGCCAGAACCACCTCCAAACCCGCCATTTTCCTCCCCCACTTAATTGCTTCAATGGAACAAGTTGACCAAACTTACATAATGGTGAAGCCCGACGGCGTGCAACGTGGCCTCGTGGGAGAAATTATTTCTAGGTTTGAGAAGAAGGGGTTTAAGTTAACTGGCTTGAAGCTCTTCCAGTGCTCAAAAGAATTAGCTGAGGAGCATTACAAGGACCTAAAACAAAAGTCATTCTTCCCCAAGCTGATTGACTATATTACTTCAGGTCCCGTTGTGTGTATGGCTTGGGAGGGTGTTGGAGTAGTGGCATCAGCACGTAAGCTTATAGGGGCTACAGATCCTCTTCAAGCTGAACCAGGCACAATAAGAGGAGACCTTGCTGTTCAAACAGGAAGGAATGTTGTTCATGGCAGTGACAGCCCTGAGAATGGCAAGCGTGAAATAGCTCTATGGTTCAAGGAAGGCGAATTATGCAAATGGACCCCTGTCCAAGCACCATGGCTGAGAGAATAA 684 0.4781 MEAVGGSTVWVTSSLARSPTLPKTIIPLLHATHQHLTAFPSQSHLFSHHSPRYAKTLRARTTSKPAIFLPHLIASMEQVDQTYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKDLKQKSFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIALWFKEGELCKWTPVQAPWLRE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1472 227 Gene3D - 75 227 IPR036850 -
Ssu6g1472 227 CDD NDPk_I 81 209 - -
Ssu6g1472 227 PRINTS Nucleoside diphosphate kinase signature 167 183 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu6g1472 227 PRINTS Nucleoside diphosphate kinase signature 82 104 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu6g1472 227 PRINTS Nucleoside diphosphate kinase signature 146 163 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu6g1472 227 PRINTS Nucleoside diphosphate kinase signature 190 209 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu6g1472 227 PRINTS Nucleoside diphosphate kinase signature 126 145 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu6g1472 227 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 30 226 - -
Ssu6g1472 227 SMART ndk_5 79 216 IPR034907 -
Ssu6g1472 227 SUPERFAMILY Nucleoside diphosphate kinase, NDK 79 225 IPR036850 -
Ssu6g1472 227 Hamap Nucleoside diphosphate kinase [ndk]. 79 214 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu6g1472 227 ProSitePatterns Nucleoside diphosphate kinases active site. 190 198 IPR023005 -
Ssu6g1472 227 Pfam Nucleoside diphosphate kinase 81 213 IPR034907 -
Ssu6g1472 227 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC 30 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1472 Ssu-Chr6 24163880 24167407 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1472 K00940 - gmx:100500478 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1472 6 24163880 24167407 Ssu6g1472 6 24163880 24167407 ECH
Ssu6g1472 6 24163880 24167407 Ssu2g1807 2 68947244 68951445 PCT