LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g1592	ATGGCAACACCCATTCTCCAGTGCATCTCACATTCTCCCACAAAACTCAACACAGAAACCCCACGACACGAATCCACTACACTTGCGCTTGAACCTTCACCTTCCCTTCTTTCTCTCATACCCAAATGCACCTCTCTCCGAGAGCTCAAGCAAATCCAAGCCTACACCATCAAAACCCACCTCCACAACAACCCCACCGTCCTCACAAAGCTCATAAACTTCTGCACTTCCAACCCCACAACCGCTTCCATGGATCACGCCCACCGCATGTTCGACCAAATTCCCCAACCAGATATTGTTCTCTTCAACACCATGGCACGTGGGTATGCACGCTTTGATGACCCTCTCAGAGcaattcttctcttttctcaGGTCTTGTGCTCTGGTCTTCTTCCAGATGACTATACTTTCTCCTCTCTTATCAAGGCTTGTGCAAGGCTCAAGGCACTTCAGGAAGGTAAACAGCTGCATTGCCTTGCTGTTAAACTTGGGCTCAGTGATAACATGTACGTGTGCCCAACTCTCATTAACATGTACACTGCCTGCAATGACATGGATGCTGCTAGGAGGGTCTTTGACAAGATCGATGAACCGTTTGTTGTCGCATATAACGCTGTCATCGCGAGCTGTGCTCGGAATAGCCGCCCCACTGAGGCCTTGTCTTTGTTCAGAGAATTGCAGGAGAGTGGCCTCAAGCCAACTGATGTCACCACGCTTGTTGCGCTTTCGTCGTGCGCTTTGCTAGGGGCGTTGGACTTAGGGAGGTGGATCCATGAGTATGTCAAGAAGAATGGGTTTGATCAGTATGTCAAGTGGCCAGGATCATACTGTGACACACAGAAGAGTTGTTGCTACCCAACAACAGGGAAGCCCGCTGCAGATTTTGGCATTCATGGTCTGTGGCCTAATTACAATGATGGCTCATACCCATCTAACTGTGATCCTAGCAACCCTTTCAACCCATCTGAGATATCTGATCTCACTAGCAGTTTGCAAAAGTCAGTCTTTAAGCAACATGACTATTTTGAAGCAGCTCTCAACCTTAGACAAAAAGCCAACCTCCTCCAAGCCCTTACCAGTGCAGGAATACAACCAGATGGGCAATCCTACAGCTTGAGCAGCATCAAAGGGGCTATAAAGGATGCAATTGGGTATACTCCATTCATTGAGTGCAATGTGGACTCATCGGGTAATAGCCAGCTATACCAAGTTTACTTGTGTGTGAACACTTCTGGGTCAGACTTCCTTGAGTGCCCTGTGTTCCCCAGGGGCAAATGTGGCTCAAACATTGAGTTCCcatctttttag	1308	0.474	MATPILQCISHSPTKLNTETPRHESTTLALEPSPSLLSLIPKCTSLRELKQIQAYTIKTHLHNNPTVLTKLINFCTSNPTTASMDHAHRMFDQIPQPDIVLFNTMARGYARFDDPLRAILLFSQVLCSGLLPDDYTFSSLIKACARLKALQEGKQLHCLAVKLGLSDNMYVCPTLINMYTACNDMDAARRVFDKIDEPFVVAYNAVIASCARNSRPTEALSLFRELQESGLKPTDVTTLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKWPGSYCDTQKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPSNPFNPSEISDLTSSLQKSVFKQHDYFEAALNLRQKANLLQALTSAGIQPDGQSYSLSSIKGAIKDAIGYTPFIECNVDSSGNSQLYQVYLCVNTSGSDFLECPVFPRGKCGSNIEFPSF	435

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g1592	435	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	199	233	IPR002885	-
	Ssu2g1592	435	Gene3D	-	335	435	IPR036430	GO:0003723\|GO:0033897
	Ssu2g1592	435	ProSitePatterns	Ribonuclease T2 family histidine active site 1.	295	302	IPR018188	GO:0003723\|GO:0033897
	Ssu2g1592	435	Pfam	PPR repeat family	97	146	IPR002885	-
	Ssu2g1592	435	Pfam	PPR repeat family	200	245	IPR002885	-
	Ssu2g1592	435	SUPERFAMILY	Ribonuclease Rh-like	267	434	IPR036430	GO:0003723\|GO:0033897
	Ssu2g1592	435	Gene3D	Tetratricopeptide repeat domain	45	177	IPR011990	GO:0005515
	Ssu2g1592	435	Gene3D	Tetratricopeptide repeat domain	178	267	IPR011990	GO:0005515
	Ssu2g1592	435	PANTHER	-	12	225	-	-
	Ssu2g1592	435	TIGRFAM	PPR: pentatricopeptide repeat domain	201	234	IPR002885	-
	Ssu2g1592	435	PANTHER	-	85	271	-	-
	Ssu2g1592	435	CDD	RNase_T2_euk	272	432	IPR033697	-
	Ssu2g1592	435	PANTHER	BNACNNG07920D PROTEIN	85	271	-	-
	Ssu2g1592	435	PANTHER	BNACNNG07920D PROTEIN	12	225	-	-
	Ssu2g1592	435	Pfam	Ribonuclease T2 family	335	418	IPR001568	GO:0003723\|GO:0033897
	Ssu2g1592	435	Pfam	Ribonuclease T2 family	269	333	IPR001568	GO:0003723\|GO:0033897
	Ssu2g1592	435	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	98	132	IPR002885	-
	Ssu2g1592	435	Gene3D	-	268	334	IPR036430	GO:0003723\|GO:0033897

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g1592	Ssu-Chr2	63806310	63823251	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g1592	129	281	Glycoside Hydrolase	AT3G49170	26.627	4.29e-12	66.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g1592	-		-	gmx:100817794	484.952

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu2g1592	2	63806310	63823251	Ssu2g1592	2	63806310	63823251	ECH
	Ssu2g1592	2	63806310	63823251	Ssu6g1258	6	20440253	20441992	PCT
	Ssu5g1214	5	39809290	39811128	Ssu2g1592	2	63806310	63823251	PCT