Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1258 ATGGCACTAGAACCCGTGGTTTCTGCCATAAAATCTGTTTCCCACAAGACCCATTTGCTCCAAATCCACGCTCACATTATACGCACAACCCTCATTCAGTACCCCACTGTTTCTCTTCAGTTCTTGTCCCGTGTAGCTCTCTCTGGTCCGTTGCAAGATGCCAGCTATTCCCACCGTTTCTTTGAGCAAATCAGCCACCCCTTGGTTTCCCATTACAACACCATGATCAGGGCTTGTTCCATGAGTGATTCACCCCAAAAGGGTTTCCTTTTATATCGAGATATGAGAAGACGAGGCATTGCTGCAGACCCTTTATCTTCTTCCTTTGCTCTTAAGTCTTGCATCAGGTTTCTGTATCTTCTTGGAGGGGTTCAGGTTCATTGCAACGTCTTTAAAGATGGGCACCAATGGGATACACTTTTGCTCACTGCTGTCATGGACTTGTATTCACAATGCCAGAGAGGTGGTGATGCGTATAAGGTGTTCGGTGAGATGCCTCAGAGGGACACTGTTGCTTGGAATGTGATGATTTCTTGCTGTATTCGAAATAATAGGACTCGGGATGCTTTGAGTTTGTTTGATGTTATGCAGAGTTCGAGCTATAAATGTGAGCCTGATGATGTTACTTGTTTGCTTCTTCTTCAGGCTTGTGCTCATTTGAATGCCTTGGAATTTGGTGAAGGAATTCATGGTTATCTTATGGAGCGAGGTTATGGGGGTGCTCTCAATTTATCTAATGCTCTCGTATTTATGTATTCGCGGTGTGGTTGTTTAGATAAGGCTTATGAAGTGTTTAAGGGAACGGGCAATAGAAGTGTGGTTTCATGGAGTGCAATGATCTCTGGTTTGGCAATGAATGGATATGGGAGAGAAGCTATTGAAGCATTTGAGGAGATGCTGAGAATTGGCATTCGGCCTGATGATCAGACATTCACGGGTGTCCTTTCTGCTTGCAGTCATTCTGGAATGGTTGATGAGGGAATGTCGTTTTTTGACCGTATGAGCAGAGAGTTTGGAATAACTCCCAACGTTCATCACTATGGGTGCATGATTGATCTCTTGGGCCGTGCTGGCTTGCTTGATAAGGCTTATCAGCTTATTATGTCAATGGTGGTGAAGCCAGATTCCACAATGTGGAGGACCTTGCTTGGGGCTTGCAGAATTCATGGCCATGTTACACTTGGTGAACGAGTAATTGGACATTTGATTGAATTGAAGGCTCAAGAAGCTGGGGATTATGTTTtacttttgaatatttattctTCAGCTGGACAGTGGGAAAAGGTAGCAGAGGTGAGAAAATTGATGAAAGATAAAGCAATCCAAACCACGCCTGGTTGTAGCACAATTGAATTGAAAGGAGTAGTACACGAGTTTGTTGTGGACGACATTTCACATTCAAGAAAACGTGAGATTTATGAGACACTGGATGAGATTAATAAGCAGCTGAGGATTGCTGGTTATGTTGTTGAACTTTCATCTGAGTTACATAAGATGGATGACAAAGAAAAGGGGTATGTGCTCTCTCATCACAGTGAAAAATTGGCTGTTGCTTTTGGGGTTCTTGCTACTCCACCTGGCACAACACTGAGAGTTGCCAATAATCTCCGTATATGTGTTGATTGCCACAATTTTCTGAAACTTTTTTCTGGGGTTTACAACCGTGATGTTATTCTTAGGGACCATAATCGGTTTCACCACTTCATGGGAGGGCACTGCTCATGTAGCGACTATTGGTAG 1740 0.4322 MALEPVVSAIKSVSHKTHLLQIHAHIIRTTLIQYPTVSLQFLSRVALSGPLQDASYSHRFFEQISHPLVSHYNTMIRACSMSDSPQKGFLLYRDMRRRGIAADPLSSSFALKSCIRFLYLLGGVQVHCNVFKDGHQWDTLLLTAVMDLYSQCQRGGDAYKVFGEMPQRDTVAWNVMISCCIRNNRTRDALSLFDVMQSSSYKCEPDDVTCLLLLQACAHLNALEFGEGIHGYLMERGYGGALNLSNALVFMYSRCGCLDKAYEVFKGTGNRSVVSWSAMISGLAMNGYGREAIEAFEEMLRIGIRPDDQTFTGVLSACSHSGMVDEGMSFFDRMSREFGITPNVHHYGCMIDLLGRAGLLDKAYQLIMSMVVKPDSTMWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDYVLLLNIYSSAGQWEKVAEVRKLMKDKAIQTTPGCSTIELKGVVHEFVVDDISHSRKREIYETLDEINKQLRIAGYVVELSSELHKMDDKEKGYVLSHHSEKLAVAFGVLATPPGTTLRVANNLRICVDCHNFLKLFSGVYNRDVILRDHNRFHHFMGGHCSCSDYW 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1258 579 Pfam DYW family of nucleic acid deaminases 487 579 IPR032867 GO:0008270
Ssu6g1258 579 TIGRFAM PPR: pentatricopeptide repeat domain 72 103 IPR002885 -
Ssu6g1258 579 TIGRFAM PPR: pentatricopeptide repeat domain 171 205 IPR002885 -
Ssu6g1258 579 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Ssu6g1258 579 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Ssu6g1258 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Ssu6g1258 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 342 IPR002885 -
Ssu6g1258 579 Pfam PPR repeat 339 370 IPR002885 -
Ssu6g1258 579 Gene3D Tetratricopeptide repeat domain 243 484 IPR011990 GO:0005515
Ssu6g1258 579 PANTHER OS08G0434000 PROTEIN 6 571 - -
Ssu6g1258 579 Pfam E motif 389 451 IPR046848 -
Ssu6g1258 579 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 571 - -
Ssu6g1258 579 Pfam PPR repeat 246 266 IPR002885 -
Ssu6g1258 579 Pfam PPR repeat 143 168 IPR002885 -
Ssu6g1258 579 Pfam PPR repeat 71 100 IPR002885 -
Ssu6g1258 579 Pfam PPR repeat family 272 319 IPR002885 -
Ssu6g1258 579 Pfam PPR repeat family 169 218 IPR002885 -
Ssu6g1258 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Ssu6g1258 579 Gene3D Tetratricopeptide repeat domain 124 225 IPR011990 GO:0005515
Ssu6g1258 579 Gene3D Tetratricopeptide repeat domain 7 123 IPR011990 GO:0005515
Ssu6g1258 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1258 Ssu-Chr6 20440253 20441992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1258 1 579 Glycoside Hydrolase AT3G49170 33.277 4.96e-114 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1258 - - gmx:100788135 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1258 6 20440253 20441992 Ssu6g1258 6 20440253 20441992 ECH
Ssu2g1592 2 63806310 63823251 Ssu6g1258 6 20440253 20441992 PCT