Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1214 ATGGCCACAACTACAAGCCCCCCTCTGCTTTTCTCCGGACCCACCAGCACCAACAACCAAGGCCAACACTTAATCCACAACAGCCGCACACACCTTATCCACTTGTTGAACGAACCCACCGCCATGCCTCAGCTCAAGCAAATTCACGCCCAAACGCTACGCACCGTTGACACCACCCACCCGCAAGCTCTCTTTCTCTACAGCAAAATTCTTCGTCACTCCTCTCTGGCCGATCTGAACTACGCCACCCGCGTGCTTCACCACTTTCCCAAGCCCAATTCCTTCATGTGGAACACCCTCATAAGAGCCTACGCGCGAAGCACCAACCACAAACACAAGGCCACGGAGCTTTACGAAGCAATGATGACGATGGAGGAGAAAACCGCAGCTCCCGATAACCACACGTTCCCCTTTGTTCTAAAGGCTTGTGCTTACACGTTTTCTCTTTGTGAAGGAAAACAGGTGCATGCCCACGTTTTGAAACATGGGTTTGAGTCGGACACCCACGTTTGTAacagtttgattcatttttacgCGACGTGCGGTTGCTTAGACTTGGCAGGGAAAATATTTCACAGGATGAATGAGAGAAACGGGGTTTCGTGGAATGTCATGATTGATTCTTGTGCGAAGGGTGGAAAGTTTGAGACTGCCTTGAGAATGTTTGGTGAGATGCAGAAGGTGCATGACCCTGATGGGTACACGATGCAGAGTGTTATTAGTGCTTGTGCTGGTTTGGGTGCTCTGTCTTTGGGTTTGTGGGCTCATGCCTATGTTTTGAAAAGGTGTGACAAGAATATGGTTGATGATGCTTTGGTCAACACTTGCTTGGTGGATATGTATTGCAAATGTGGGGAGTTAGAAATTGCAAAGCAGGTCTTTGAAAGCATGCCTTCTAGAGATGTGAATTCATGGAATTCAATGATCTTGGGTTTTGCAATGCATGGTAAGGCTGAAGCTGCATTGGACTGTTATGTCAGAATGGTGAAGGTGGAGAATATTGTGCCCAATTCAATCACTTTTGTTGGTGTTTTGAGTGCATGTAACCACAGGGGCATGGTTGATGAGGGGATTGTGCATTTTGACGTGATGACTAAGGAGTACAATGTGGAACCAAGATTGGAACATTATGGTTGTCTCGTTGACCTTTTTGCTCGAGCTGGGCGCATCGATGAGGCTCTCAACTTGGTTTCAGAAATGCCGATCAAACCAGATGCTGTAATCTGGAGGAGTCTTTTGGATGCTTGTTGCAAGCAACATGCAAGTGTTGAGCTAAGTGAGGAAATGGCAAAGCAAGTTTTTGAGTCAGAGGGGAGTGTGTGCAGCGGTGTTTATGTGCTTTTGTCAAAAGTGTATGCTTCTGCTTGCATGTGGAATGATGTAGGATTGCTTAGAAAACTAATGAGTCATAAGGGTGTGGCTAAAGAGCCTGGCTGCAGTTTAATAGAGATAGATGGAGTGGTTCATGAATTTTTTGCTGGGGACACCACTCATCTACagagtaaaaatatatacaaggtTGTGAATGAAATTGAGAAGAAGCTAGAATCAATAGGGTATTTACCTGACAACACAGGGGCACCTATGGTTGATGAGGTTAATGATGGAAAACAGAATACTCTGAGGTTGCACAGTGAGAGACTGGCCATAGCTTTTGGGATCTTAAACTCAAGACCTGGCGTGCCTATAAGAGTGTTTAAGAATCTTAGGGTGTGTAATGATTGCCACAGggttattaaattaatctccAGATTTTACAATGTGGAGATAATTGTTAGAGATCGTGCTCGATTCCATCATTTTAAAGATGGAATTTGTTCTTGTATGGATTATTGGTGA 1839 0.441 MATTTSPPLLFSGPTSTNNQGQHLIHNSRTHLIHLLNEPTAMPQLKQIHAQTLRTVDTTHPQALFLYSKILRHSSLADLNYATRVLHHFPKPNSFMWNTLIRAYARSTNHKHKATELYEAMMTMEEKTAAPDNHTFPFVLKACAYTFSLCEGKQVHAHVLKHGFESDTHVCNSLIHFYATCGCLDLAGKIFHRMNERNGVSWNVMIDSCAKGGKFETALRMFGEMQKVHDPDGYTMQSVISACAGLGALSLGLWAHAYVLKRCDKNMVDDALVNTCLVDMYCKCGELEIAKQVFESMPSRDVNSWNSMILGFAMHGKAEAALDCYVRMVKVENIVPNSITFVGVLSACNHRGMVDEGIVHFDVMTKEYNVEPRLEHYGCLVDLFARAGRIDEALNLVSEMPIKPDAVIWRSLLDACCKQHASVELSEEMAKQVFESEGSVCSGVYVLLSKVYASACMWNDVGLLRKLMSHKGVAKEPGCSLIEIDGVVHEFFAGDTTHLQSKNIYKVVNEIEKKLESIGYLPDNTGAPMVDEVNDGKQNTLRLHSERLAIAFGILNSRPGVPIRVFKNLRVCNDCHRVIKLISRFYNVEIIVRDRARFHHFKDGICSCMDYW 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1214 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 228 IPR002885 -
Ssu5g1214 612 MobiDBLite consensus disorder prediction 1 20 - -
Ssu5g1214 612 PANTHER OS01G0913400 PROTEIN-RELATED 24 554 - -
Ssu5g1214 612 Gene3D Tetratricopeptide repeat domain 331 490 IPR011990 GO:0005515
Ssu5g1214 612 Gene3D Tetratricopeptide repeat domain 197 256 IPR011990 GO:0005515
Ssu5g1214 612 Pfam Pentatricopeptide repeat domain 161 196 IPR002885 -
Ssu5g1214 612 Pfam E motif 420 483 IPR046848 -
Ssu5g1214 612 TIGRFAM PPR: pentatricopeptide repeat domain 275 302 IPR002885 -
Ssu5g1214 612 TIGRFAM PPR: pentatricopeptide repeat domain 304 337 IPR002885 -
Ssu5g1214 612 TIGRFAM PPR: pentatricopeptide repeat domain 377 400 IPR002885 -
Ssu5g1214 612 TIGRFAM PPR: pentatricopeptide repeat domain 200 227 IPR002885 -
Ssu5g1214 612 Pfam PPR repeat 376 400 IPR002885 -
Ssu5g1214 612 Pfam PPR repeat 95 107 IPR002885 -
Ssu5g1214 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Ssu5g1214 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 128 IPR002885 -
Ssu5g1214 612 PANTHER BNAC04G18690D PROTEIN 24 554 - -
Ssu5g1214 612 SUPERFAMILY TPR-like 100 331 IPR011990 GO:0005515
Ssu5g1214 612 Pfam DYW family of nucleic acid deaminases 529 612 IPR032867 GO:0008270
Ssu5g1214 612 Gene3D Tetratricopeptide repeat domain 257 330 IPR011990 GO:0005515
Ssu5g1214 612 Gene3D Tetratricopeptide repeat domain 51 196 IPR011990 GO:0005515
Ssu5g1214 612 Pfam PPR repeat family 301 348 IPR002885 -
Ssu5g1214 612 Pfam PPR repeat family 198 244 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1214 Ssu-Chr5 39809290 39811128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1214 46 612 Glycoside Hydrolase AT3G49170 34.555 1.50e-117 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1214 - - gmx:100791183 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1214 5 39809290 39811128 Ssu2g1592 2 63806310 63823251 PCT