Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3139 ATGATTATAAACAACGACTTTAAGGTGATTCCGAGGGAAGCGAGGAATTTCGAGCACGGGGAAGGTAACTACTACGCTGTGTTGGTGGGGAGTGCAATAATATGGCAGGCTTTTTTCCTGGGAGCGATTGGGGTTATATTTTGTGCCTCGTCTTTGTTGTCTGGTATTTTAATTGCTGTGCTGCTTCCCATAACGGAAGTGTTGGCGGTTTATTTCTACAAAGAGAAGTTTCAAGCGGAGAAGGGGGTTTCTCTGTTGCTCTCGCTTTGGGGATTTGTTTCCTACTTCTATGGTGAGATTAAACATGCTAGGAAAATGAAGAAGAGGAACAGCATGGCCGAAGGAGACCAAGACAGAACCATGAAGCGGATTCTTCTCATAATAAACTGCGTCTTACTCAGCATCGGAACCTCCGGTGGCCCCCTCGTAATGCGTCTCTACTTCCTCCGCGGCGGCAAGCGCGTGTGGCTGTCCAGCTTCCTCGAAACCGCCGGCTTCCCCGTCATGCTCCTCCCCCTCGCCGTCTCCTacctccgccgccgccgcctCCCCGCCGCCGCCGGAACGGCGAAACCGGAGCCGATCTCGATGAAGCCCCCTCTGTTATTCGCCTCGGCCTTCATCGGAATCCTGACCGGCCTCGACGACTACCTCTACGCCTACGGCGTGGCTCGGCTTCCCGTGTCCACGTCATCGCTCATCATCGCGACGCAGTTAGGCTTCACCGCCTTCTTCGCGTTCCTCCTGGTGAGGCAGAAGTTCACGGCGTACTCGGTGAACGCCGTCGTTTTGCTCATCGTTGGGGCCGGCGTTTTGGCCCTTCACACCAGCGGGGACCGTCCCACCGGCGAGTCCGCTAAGGAATACATCATGGGCTTTGTCATGACAATAATCGCCGCTGCATTGTATGGCTTCGTGTTACCCTCGGTGGAGTGGGTCTACaaaaaaaccaaacaacctcttaCTTATTCTCTTGTAATGGAGATTCAGTTTGTCATGTGCTTCTTCGCCACTCTGTTTTGCACCGTTGGGATGATTATAAACAACGACTTTAAGGTGATTCGGAGGGAAGCGAGGAATTTCGAGCACGGGGAAGGTAACTACTACGCTGTGTTGGTGGGGAGTGCAATAATATGGCAGGCTTTTTTCCTGGGAGCGATTGGGGTTATATTTTGTGCCTCGTCTTTGTTGTCTGGTATTTTAATTGCTGTGCTGCTTCCCATAACGGAAGTGTTGGCGgttattttctacaaagagAAGTTTCAAGCGGAGAAGGGGGTTTCTCTGTTGCTCTCGCTTTGGGGATTTGTTTCCTACTTCTATGGTGAGATTAAACATGCTAGGAAAATGAAGAAGAGGAACAGTGACACGGAGATAGAGGTGCCTCAGTATTCGTGA 1398 0.4957 MIINNDFKVIPREARNFEHGEGNYYAVLVGSAIIWQAFFLGAIGVIFCASSLLSGILIAVLLPITEVLAVYFYKEKFQAEKGVSLLLSLWGFVSYFYGEIKHARKMKKRNSMAEGDQDRTMKRILLIINCVLLSIGTSGGPLVMRLYFLRGGKRVWLSSFLETAGFPVMLLPLAVSYLRRRRLPAAAGTAKPEPISMKPPLLFASAFIGILTGLDDYLYAYGVARLPVSTSSLIIATQLGFTAFFAFLLVRQKFTAYSVNAVVLLIVGAGVLALHTSGDRPTGESAKEYIMGFVMTIIAAALYGFVLPSVEWVYKKTKQPLTYSLVMEIQFVMCFFATLFCTVGMIINNDFKVIRREARNFEHGEGNYYAVLVGSAIIWQAFFLGAIGVIFCASSLLSGILIAVLLPITEVLAVIFYKEKFQAEKGVSLLLSLWGFVSYFYGEIKHARKMKKRNSDTEIEVPQYS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3139 465 PANTHER PURINE PERMEASE 2 1 112 - -
Ssu1g3139 465 SUPERFAMILY Multidrug resistance efflux transporter EmrE 197 276 - -
Ssu1g3139 465 PANTHER OS09G0467300 PROTEIN-RELATED 117 459 IPR030182 GO:0015211|GO:0016021
Ssu1g3139 465 PANTHER OS09G0467300 PROTEIN-RELATED 1 112 IPR030182 GO:0015211|GO:0016021
Ssu1g3139 465 PANTHER PURINE PERMEASE 2 117 459 - -
Ssu1g3139 465 Pfam Purine nucleobase transmembrane transport 1 105 - -
Ssu1g3139 465 Pfam Purine nucleobase transmembrane transport 124 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3139 Ssu-Chr1 82204566 82229064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3139 136 462 Organic Solute Cotransporters AT1G28230 62.349 1.06e-141 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3139 - - gmx:100803818 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3139 1 82204566 82229064 Ssu1g3139 1 82204566 82229064 ECH
Ssu6g2469 6 58148543 58150597 Ssu1g3139 1 82204566 82229064 PCT
Ssu1g3139 1 82204566 82229064 Ssu6g3412 6 76646395 76647537 PCT