Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1926 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCCAGCACATAAATTTCAAGAAGAGGGATGCATGCCAAAGTTGTGGATACCCCAAGTTTGGAGGCCCTGACCCAACAACTTACAGACACAACTGGACAGAAGCCTTGGCAGGGGACTGGTATTGCACTGCTATGAACTGTGGAGCACACAACTATGCCAGCAGATCAAGCTGCTATAGATGTGGTGCATTGAAAGAAGGTTATTCTTGTAGATTTGGGGGAAACATGGACGGCTCTGGAGGATATGGTTCTGATTGCAATTTCCCCCCAGGGTGGAAAACTGGTGACTGGATTTGCACTAGAATTGGCTGTGGAGTGCATAACTATGCCAGCAGGACAGAATGTTTCAACTGCAAAACACCAAGAAATTTTGGTGAGAATAAGCTTAGCCTTCATTAA 435 0.4644 MSWSGGDWMCGACQHINFKKRDACQSCGYPKFGGPDPTTYRHNWTEALAGDWYCTAMNCGAHNYASRSSCYRCGALKEGYSCRFGGNMDGSGGYGSDCNFPPGWKTGDWICTRIGCGVHNYASRTECFNCKTPRNFGENKLSLH 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1926 144 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
Ssu1g1926 144 ProSitePatterns Zinc finger RanBP2-type signature. 109 130 IPR001876 -
Ssu1g1926 144 SMART zf_4 107 133 IPR001876 -
Ssu1g1926 144 SMART zf_4 6 30 IPR001876 -
Ssu1g1926 144 SMART zf_4 50 76 IPR001876 -
Ssu1g1926 144 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Ssu1g1926 144 Pfam Zn-finger in Ran binding protein and others 49 78 IPR001876 -
Ssu1g1926 144 Pfam Zn-finger in Ran binding protein and others 105 134 IPR001876 -
Ssu1g1926 144 Gene3D - 42 79 - -
Ssu1g1926 144 Gene3D - 1 35 - -
Ssu1g1926 144 Gene3D - 96 136 - -
Ssu1g1926 144 SUPERFAMILY Ran binding protein zinc finger-like 48 78 IPR036443 -
Ssu1g1926 144 SUPERFAMILY Ran binding protein zinc finger-like 101 136 IPR036443 -
Ssu1g1926 144 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Ssu1g1926 144 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Ssu1g1926 144 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Ssu1g1926 144 PANTHER ZINC FINGER PROTEIN 1 138 - -
Ssu1g1926 144 ProSiteProfiles Zinc finger RanBP2 type profile. 105 136 IPR001876 -
Ssu1g1926 144 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1926 Ssu-Chr1 53044538 53045422 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1926 - - gmx:100792208 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1926 1 53044538 53045422 Ssu4g3411 4 84723051 84723840 ECH
Ssu1g1926 1 53044538 53045422 Ssu1g1926 1 53044538 53045422 ECH
Ssu6g1060 6 17258439 17259391 Ssu1g1926 1 53044538 53045422 PCT
Ssu1g1926 1 53044538 53045422 Ssu6g1059 6 17246710 17247588 PCT