Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu6g1060 | ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGTTTGCCAGCACATAAATTTCAAGAAGAGGGAAGCATGCCAGAGTTGTGGATACCCCAAGTATGGGGGCCCTGACCCTTCAACCTACAGATACAACAGGACTGAAGCTTTGGCAGGAGATTGGTTTTGCAACTGTGGAGGTCACAACTATGCCAGTCGATCAAGCTGCTACAGATGTGGTGCAATGAAAGATGATTACTCTTCAGGATATGGCAACAGCTCTGGAGGATATGGATCTGACACTTTCCCCCCAGGATGGAAGACTGGAGACTGGCTTTGCCCAAGAATCGGCTGTGGAGTACATAATTATGCTAGCAGGGCAGAATGCTTCAAGTGCAAAATGCCAAGGGATTTTGGTGAGAAGTTTAGCTTCTGA | 408 | 0.4779 | MSWSGGDWMCGVCQHINFKKREACQSCGYPKYGGPDPSTYRYNRTEALAGDWFCNCGGHNYASRSSCYRCGAMKDDYSSGYGNSSGGYGSDTFPPGWKTGDWLCPRIGCGVHNYASRAECFKCKMPRDFGEKFSF | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu6g1060 | 135 | SMART | zf_4 | 50 | 73 | IPR001876 | - | |
| Ssu6g1060 | 135 | SMART | zf_4 | 6 | 30 | IPR001876 | - | |
| Ssu6g1060 | 135 | SMART | zf_4 | 100 | 126 | IPR001876 | - | |
| Ssu6g1060 | 135 | ProSitePatterns | Zinc finger RanBP2-type signature. | 102 | 123 | IPR001876 | - | |
| Ssu6g1060 | 135 | Gene3D | - | 93 | 129 | - | - | |
| Ssu6g1060 | 135 | Gene3D | - | 1 | 35 | - | - | |
| Ssu6g1060 | 135 | Gene3D | - | 42 | 76 | - | - | |
| Ssu6g1060 | 135 | PANTHER | ZINC FINGER, RANBP2-TYPE-RELATED | 1 | 131 | - | - | |
| Ssu6g1060 | 135 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 98 | 129 | IPR001876 | - | |
| Ssu6g1060 | 135 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 4 | 33 | IPR001876 | - | |
| Ssu6g1060 | 135 | Pfam | Zn-finger in Ran binding protein and others | 98 | 126 | IPR001876 | - | |
| Ssu6g1060 | 135 | Pfam | Zn-finger in Ran binding protein and others | 6 | 32 | IPR001876 | - | |
| Ssu6g1060 | 135 | ProSitePatterns | Zinc finger RanBP2-type signature. | 8 | 27 | IPR001876 | - | |
| Ssu6g1060 | 135 | PANTHER | ZINC FINGER PROTEIN | 1 | 131 | - | - | |
| Ssu6g1060 | 135 | SUPERFAMILY | Ran binding protein zinc finger-like | 46 | 76 | IPR036443 | - | |
| Ssu6g1060 | 135 | SUPERFAMILY | Ran binding protein zinc finger-like | 3 | 34 | IPR036443 | - | |
| Ssu6g1060 | 135 | SUPERFAMILY | Ran binding protein zinc finger-like | 92 | 129 | IPR036443 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu6g1060 | Ssu-Chr6 | 17258439 | 17259391 | Dispersed/Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu6g1060 | - | - | gmx:100780120 | 273.863 |
Event-related genes