Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1059 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGTTTGCCAGCACATAAATTTCAAGAAGAGGGAAGCATGCCAGAGTTGTGGATACCCCAAGTATGGGGGCCCTGACCCTTCAACCTACAGATACAACAGGACTGAAGCTTTGGCAGGAGATTGGTTTTGCAACTGTGGAGGTCACAACTATGCCAGTCGATCAAGCTGCTACAGATGTGGTGCAATGAAAGATGATTACTCTTCAGGATATGGCAACAGCTCTGGAGGATATGGATCTGACACTTTCCCCCCAGGATGGAAGACTGGAGACTGGCTTTGCCCAAGACTTGGATGTGGAGTGCATAATTATGCTAGCAGGACAGAATGCTATAAATGCAAAATGCCAAGGGATTTTGGTGAGAAAAGTTTAGTCATCTGA 411 0.4672 MSWSGGDWMCGVCQHINFKKREACQSCGYPKYGGPDPSTYRYNRTEALAGDWFCNCGGHNYASRSSCYRCGAMKDDYSSGYGNSSGGYGSDTFPPGWKTGDWLCPRLGCGVHNYASRTECYKCKMPRDFGEKSLVI 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1059 136 ProSitePatterns Zinc finger RanBP2-type signature. 102 123 IPR001876 -
Ssu6g1059 136 PANTHER ZINC FINGER PROTEIN 1 132 - -
Ssu6g1059 136 Gene3D - 1 35 - -
Ssu6g1059 136 Gene3D - 93 129 - -
Ssu6g1059 136 Gene3D - 42 76 - -
Ssu6g1059 136 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Ssu6g1059 136 SUPERFAMILY Ran binding protein zinc finger-like 46 76 IPR036443 -
Ssu6g1059 136 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Ssu6g1059 136 ProSiteProfiles Zinc finger RanBP2 type profile. 98 129 IPR001876 -
Ssu6g1059 136 Pfam Zn-finger in Ran binding protein and others 98 126 IPR001876 -
Ssu6g1059 136 Pfam Zn-finger in Ran binding protein and others 6 32 IPR001876 -
Ssu6g1059 136 SMART zf_4 100 126 IPR001876 -
Ssu6g1059 136 SMART zf_4 50 73 IPR001876 -
Ssu6g1059 136 SMART zf_4 6 30 IPR001876 -
Ssu6g1059 136 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 132 - -
Ssu6g1059 136 SUPERFAMILY Ran binding protein zinc finger-like 92 129 IPR036443 -
Ssu6g1059 136 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1059 Ssu-Chr6 17246710 17247588 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1059 - - gmx:100780120 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1926 1 53044538 53045422 Ssu6g1059 6 17246710 17247588 PCT