Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1202 ATGAGGAGGATCCAAACCTGTGTGTCTTCTTTTGCAATTCACATTATTCTTCTTGCTTCTGTTTCTGTTCCCTTCACACTATCCCAACCCTCTTTCCCATGGAAAGATGGGAATGGCGATTTGGTGGACCAAATATGCAAAAAGACACCCTTTTACAACCTTTGCAGCTCGATCCTGCACTCAAACCCCCTGAGTCCAAAACCTGATCTCAAAGGGGTGGCCCTCTTGATGGTGAACAACATTCTAGCAAATGCAACTGACACACTGAGTTACATTGAGGGGTTGATCAAGCAGACCTCAGACCGTGAGTTGGAGCAAGCCTTGGCTTTCTGTGCTGAGTCATATATCCCACTTGTCAAATACATTCTCCCACAAGCTGCTGATGCCATAAGCCAGGGCCGTTTTGGCTTTGCCAGTTACTGCATATCTTATGCTCTCAAAGAAGTGAGTAGCTGTGACAAGAAATTCTCTGGCGCAACTCAGGCACCCTTAGGGGACAGAAACGACATTGTGCAGAAGCTAGTGGATGTGGCTTCGGCAATAATCAAACTACTACTAAAGGGCTGA 567 0.4638 MRRIQTCVSSFAIHIILLASVSVPFTLSQPSFPWKDGNGDLVDQICKKTPFYNLCSSILHSNPLSPKPDLKGVALLMVNNILANATDTLSYIEGLIKQTSDRELEQALAFCAESYIPLVKYILPQAADAISQGRFGFASYCISYALKEVSSCDKKFSGATQAPLGDRNDIVQKLVDVASAIIKLLLKG 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1202 188 Pfam Plant invertase/pectin methylesterase inhibitor 40 181 IPR006501 GO:0004857
Ssu1g1202 188 PANTHER PECTINESTERASE INHIBITOR-LIKE 17 188 - -
Ssu1g1202 188 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 17 188 - -
Ssu1g1202 188 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 185 IPR035513 -
Ssu1g1202 188 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 186 IPR035513 -
Ssu1g1202 188 SMART PMEI_2 37 181 IPR006501 GO:0004857
Ssu1g1202 188 CDD CIF_like 40 185 IPR034087 GO:0004857|GO:0043086
Ssu1g1202 188 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 185 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1202 Ssu-Chr1 26618426 26618992 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1202 - - gmx:100527840 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1202 1 26618426 26618992 Ssu1g1202 1 26618426 26618992 ECH
Ssu6g0440 6 6844569 6845123 Ssu1g1202 1 26618426 26618992 PCT
Ssu1g1202 1 26618426 26618992 Ssu6g0441 6 6852819 6853352 PCT