Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0441 ATGAAGTCACTAGCTCTTATCTTTTACATTCTTGTTGTAGCTGCGATTTCAGTGCCAGCAAGTAACTGGAGAATCATCCAGCAAAACGAGGCCAATAATCTGATAGAAGAAACTTGCAAGCAGACACCCCATCACGACCTTTGCATCCAGTACCTCTTATCCGACCCTCGCAGCACTGATGCAGATGTCACAGGGCTGGCACTAATCATGGTCAACGTGATCAAAACCAAAGCAAACAATGCCTTGGAGAAGATCCATCAACTGCTTCGGGAAAGCCCCGAACCTGGTCAAAAGGAAGCCCTGAGTTTATGTGCAGATAGATACAAAGCGATTTTGGAAGCTGACGTGGCACAAGCCATTGCGGCTCTGCAGAAAGGGGACCCCAAGTTCGCAGAAGATGGTGCGAATGATGCTGCCGTTGAGGCCACCGCTTGCGAGAACAGCTTCTCTGGGAAATCGCCACTCACCAACGACAACAATGCTATGCACGATGTTGCAGCCACAACAGCAGCTATAGTTAGACAATTGCTCTAG 534 0.4869 MKSLALIFYILVVAAISVPASNWRIIQQNEANNLIEETCKQTPHHDLCIQYLLSDPRSTDADVTGLALIMVNVIKTKANNALEKIHQLLRESPEPGQKEALSLCADRYKAILEADVAQAIAALQKGDPKFAEDGANDAAVEATACENSFSGKSPLTNDNNAMHDVAATTAAIVRQLL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0441 177 Coils Coil 71 91 - -
Ssu6g0441 177 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 177 IPR035513 -
Ssu6g0441 177 CDD CIF_like 32 176 IPR034087 GO:0004857|GO:0043086
Ssu6g0441 177 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1 176 IPR006501 GO:0004857
Ssu6g0441 177 SMART PMEI_2 30 172 IPR006501 GO:0004857
Ssu6g0441 177 PANTHER PECTINESTERASE INHIBITOR-LIKE 16 177 - -
Ssu6g0441 177 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 16 177 - -
Ssu6g0441 177 Pfam Plant invertase/pectin methylesterase inhibitor 33 171 IPR006501 GO:0004857
Ssu6g0441 177 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 176 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0441 Ssu-Chr6 6852819 6853352 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0441 - - gmx:100306719 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1202 1 26618426 26618992 Ssu6g0441 6 6852819 6853352 PCT