Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst7g01403 | CCTAGTCCTAGCCCCGCTGTTGATGAGAACTATCACAATGCATCTAATAACTTGTTTGATGTTCGAGCATTTGGGGCCGTTGGAGATGGAGTAACTGATGATACAGAGTCATTCAAGATGGCATGGGACACTGCCTGCCAAAGTGAATCAGCGGTTAAGGTTATCCTTGTTCCCCGTGGTTTCTCCTTCATTACTCAATCTACTATTTTCACAGGTCCTTGTAAAGGTGGCTTAGTACTAAAGGTTGATGGCACTCTCATGCCACCTGATGGACCTGAATCTTGGCCTAAGAACAACAGTAGGCGTCAATGGCTTGTCTTTTATAGAATCAATGGGATGTCACTCGAAGGAAGTGGATTAATAGATGGGAGAGGAGCAAAATGGTGGGACCTCCCTTGTAAGCCTCACAAGGGGCCTCATGGGACAACATCTTCAGGACCTTGTGACAGCCCTGTGGCCATTAGGTTTTTCATGAGTTCCAACTTGACTGTACAAGGACTTAGGATAAAGAACAGTCCCCAATTCCACTTCAGATTTGATGGCTGCGAAAGCGTCCACGTGGAATCAATCTACATAACAGCTCCAGCACTAAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGACGTGAAAATATACAATTCGGTCATTTCCAATGGTGATGACTGCGTGTCCATTGGAGCCGGTTGCCATGATGTTGATGTAAAGAACATAACATGTGGACCTGGTCATGGTATAAGCATTGGTAGTCTGGGAAATCACAACTCCAGAGCCTGTGTTTCAAACATTACGGTGAGGGACTCGGTTATAAAAGTGTCAGATAACGGGGTTAGGATCAAGACATGGCAAGGTGGATCAGGATCAGTATCGGGAGTGACATTTAGTAATATTCACATGGAAGGTGTAAGAAACCCGATTATAATTGATCAGTTTTACTGCCTCAGCAAGGATTGCGCCAACAAGACCTCTGCAGTATTTGTATCGAATATATCTTACACAAACATAAAGGGAACATATGATATAAGGCACCCTCCCATGCATTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTGACCCTCTCAGATATTGAGCTTCTTCCAGCTCAAGGAGACATGGTGCTTGATCCTTACTGCTGGAGTGCCTATGGAAACTCTGAGACACTAACCATTCCCCCAGTCTCTTGCTTGCTTGAAGGCCTTCCTCAGTCCATTTCAGGCAATGACATAGATCATTGCTGA | 1248 | 0.4487 | PSPSPAVDENYHNASNNLFDVRAFGAVGDGVTDDTESFKMAWDTACQSESAVKVILVPRGFSFITQSTIFTGPCKGGLVLKVDGTLMPPDGPESWPKNNSRRQWLVFYRINGMSLEGSGLIDGRGAKWWDLPCKPHKGPHGTTSSGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGAGCHDVDVKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGSVSGVTFSNIHMEGVRNPIIIDQFYCLSKDCANKTSAVFVSNISYTNIKGTYDIRHPPMHFACSDSVPCTNLTLSDIELLPAQGDMVLDPYCWSAYGNSETLTIPPVSCLLEGLPQSISGNDIDHC | 415 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst7g01403 | 415 | FunFam | Polygalacturonase At1g48100 family | 7 | 402 | - | - | |
| Spst7g01403 | 415 | SUPERFAMILY | Pectin lyase-like | 15 | 403 | IPR011050 | - | |
| Spst7g01403 | 415 | Gene3D | - | 5 | 400 | IPR012334 | - | |
| Spst7g01403 | 415 | PANTHER | - | 17 | 387 | - | - | |
| Spst7g01403 | 415 | Pfam | Glycosyl hydrolases family 28 | 50 | 368 | IPR000743 | GO:0004650|GO:0005975 | |
| Spst7g01403 | 415 | ProSitePatterns | Polygalacturonase active site. | 239 | 252 | IPR000743 | GO:0004650|GO:0005975 | |
| Spst7g01403 | 415 | SMART | pbh1 | 182 | 208 | IPR006626 | - | |
| Spst7g01403 | 415 | SMART | pbh1 | 291 | 312 | IPR006626 | - | |
| Spst7g01403 | 415 | SMART | pbh1 | 232 | 252 | IPR006626 | - | |
| Spst7g01403 | 415 | SMART | pbh1 | 262 | 283 | IPR006626 | - | |
| Spst7g01403 | 415 | SMART | pbh1 | 209 | 230 | IPR006626 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst7g01403 | Spst-Chr7 | 60573559 | 60575397 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst7g01403 | 15 | 415 | Glycoside Hydrolase | AT1G02460 | 72.277 | 0.0 | 629 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst7g01403 | - | - | gmx:100792285 | 818.535 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Spst7g01403 | 7 | 60573559 | 60575397 | Spst7g01403 | 7 | 60573559 | 60575397 | ECH | |
| Spst1g02447 | 1 | 33166866 | 33171417 | Spst7g01403 | 7 | 60573559 | 60575397 | ECH | |
| Spst6g01496 | 6 | 14027920 | 14030445 | Spst7g01403 | 7 | 60573559 | 60575397 | ECH | |
| Spst1g02447 | 1 | 33166866 | 33171417 | Spst7g01403 | 7 | 60573559 | 60575397 | PCT |