Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01496 ATGAGTCTCATTCGCTGGTCTTTTATCCTATGGATTACCATGATTCTTTATATCCATAATTGGGATAATGTGGAAGGAAGATACCACTATCACAAGGGGCAGAATATAAGTCCCCCTGCTAAGTCCCCTACACCAGAGAAACCTTCTTCACCTCCTTCCATTTCCCCTGGTGTTCCCTCTGACCCTTATCCCAATGATCCTGGGGATTCCCCTTCAAATTGCATTTTCGATGTAAGATCCTTTGGGGCAGTTGGAGATGGTTCTGCTGATGACACAGAAGCATTCGTGGCAGCGTGGAAAGCAGCTTGCGCAGTAGAGTCAGGGGTCCTTCTTGTTCCAGAAAATTACTGTTTCAAGATAACTTCAACTATCTTTACAGGTCCATGCAAGCCTGGACTAGTATTTCAAGTGGATGGTACTCTCATGGCACCAGATGGACCAGAATCGTGGCCCAAGGAAGATAGCCACAGTCAATGGCTTGTGTTCTATCGACTTGATCAAATGACTCTTACTGGGACAGGAACCATAGAAGGCAATGGGGAACAGTGGTGGGATCTTCCTTGCAAACCTCACAGGGGCCCCGATGGAAAAACTGTTTCAGGACCATGTGATAGCCCTACAATGATACGGTTCTTCATGAGCTCCAATTTGGTGCTGAGGGGGGTGAAAATTCAAAACAGTCCTATGTTCCACGTGAAATTCGATGGCTGCCAAGGAGTACTGATAGACAAGTTGTCAATATCTTCTCCTAAACTCAGTCCAAATACTGATGGAATCCACTTAGGAAACACAAAGGGTGTTGGGATATACAACTCTATGATAAGCAACGGGGATGATTGCATCTCGATTGGACCCGGGTGCTCAGATGTGGACATAGAGGGTGTTACTTGTGCTCCTACCCATGGTATTAGCATTGGAAGCCTTGGAGTGCACAATTCCCAGGCATGTGTCTCAAACTTAACTGTTCGCAACACCATCATAAAGGAATCAGACAATGGCCTCAGGATCAAGACATGGCAAGGTGGAACGGGCTCAGTGACTGGCCTAAGATTTGAAAACATCCAAATGGAGAATGTGAGGAACTGCATCATCATTGACCAGTACTACTGCTTGTCCAAGGAGTGTCTCAACCAAACTTCTGCAGTGCATGTAAACGATGTGATATATAGGAACATAAAGGGTACTTATGATGTGAGAACCCCTCCTATACACTTTGCTTGCAGTGACACTGTGGCATGCACCAACATAACACTCTCTGAGATTGAGCTTTTGCCATACGAAGGGGAATTACTAGATGACCCTTTTTGTTGGAATGCTTATGGAACTCAAGAGACCATGACTATACCTCCACTTGATTGCTTAAGAGAAGGTGAACCTGATACAGTTGTGGAGCTCTCTGCATATGAATGCAGGAGTTAA 1419 0.4524 MSLIRWSFILWITMILYIHNWDNVEGRYHYHKGQNISPPAKSPTPEKPSSPPSISPGVPSDPYPNDPGDSPSNCIFDVRSFGAVGDGSADDTEAFVAAWKAACAVESGVLLVPENYCFKITSTIFTGPCKPGLVFQVDGTLMAPDGPESWPKEDSHSQWLVFYRLDQMTLTGTGTIEGNGEQWWDLPCKPHRGPDGKTVSGPCDSPTMIRFFMSSNLVLRGVKIQNSPMFHVKFDGCQGVLIDKLSISSPKLSPNTDGIHLGNTKGVGIYNSMISNGDDCISIGPGCSDVDIEGVTCAPTHGISIGSLGVHNSQACVSNLTVRNTIIKESDNGLRIKTWQGGTGSVTGLRFENIQMENVRNCIIIDQYYCLSKECLNQTSAVHVNDVIYRNIKGTYDVRTPPIHFACSDTVACTNITLSEIELLPYEGELLDDPFCWNAYGTQETMTIPPLDCLREGEPDTVVELSAYECRS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01496 472 MobiDBLite consensus disorder prediction 35 66 - -
Spst6g01496 472 SMART pbh1 317 338 IPR006626 -
Spst6g01496 472 SMART pbh1 346 367 IPR006626 -
Spst6g01496 472 SMART pbh1 287 307 IPR006626 -
Spst6g01496 472 SMART pbh1 264 285 IPR006626 -
Spst6g01496 472 SMART pbh1 237 263 IPR006626 -
Spst6g01496 472 FunFam Polygalacturonase At1g48100 family 64 457 - -
Spst6g01496 472 Pfam Glycosyl hydrolases family 28 110 423 IPR000743 GO:0004650|GO:0005975
Spst6g01496 472 MobiDBLite consensus disorder prediction 41 66 - -
Spst6g01496 472 PANTHER - 74 442 - -
Spst6g01496 472 SUPERFAMILY Pectin lyase-like 73 469 IPR011050 -
Spst6g01496 472 Gene3D - 68 460 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01496 Spst-Chr6 14027920 14030445 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01496 9 469 Glycoside Hydrolase AT1G48100 71.552 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01496 - - gmx:100785528 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01496 6 14027920 14030445 Spst6g01496 6 14027920 14030445 ECH
Spst6g01496 6 14027920 14030445 Spst1g02447 1 33166866 33171417 ECH
Spst6g01496 6 14027920 14030445 Spst7g01403 7 60573559 60575397 ECH