Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02447 ATGTCGCCTAGGCATTACTCTCATTCAAAACATAAGCACCCACATTCTCATAAATCTTCTAAACACTCAAAGCTTGCACCTCCTAGCCCTCCTCATAATGAGAACAATAACAATGCCTCTGGCGTTTTTGATGTACGAAAATTTGGAGCAATAGGTGATGGAAAAACAGATGATACAGAGTCATTTAAGATGGCATGGGACACTGCTTGCCAGAGTGAATCAGCAGTTAATAATATTCTTGCACCCCAAGGTTTCTCCTTCCTCATTCGGTCCACTATCTTCACTGGTCCTTGTCAAGGTGTCTTGGTGTTGAAGGTTGATGGCACTCTCATGCCACCTGATGGACCTGAATCTTGGCCAAAGAACAATAGTAGACACCAATGGTTGGTCTTTTATAGAATCAATGGAATGTCACTGGAAGGAAGTGGTTTAATTGATGGGAGAGGAGAAAAATGGTGGGACCTCCCCTGTAAGCCTCATAAGGGACCTAATGGGACAACACTCCCTGGAACCTGTGATAGTCCAATTGCCATAAGGTTTTTTATGAGTTCCAACTTGACTGTGCAAGGACTAAGGATAAAGAACAGTCCTCAGTTCCATTTCAGATTTGATGGCTGCAAAAATGTCCACATAGAATCAATCTACATAACAGCTCCAAAACTTAGCCCCAATACTGATGGAATTCACATAGAAAATACTAATAACGTGAAAATATACAATTCTGTTATTTCTAATGGCGATGATTGTGTATCCATTGGATCAGGCTGCAATGATGTCGATATTAAAAACATTACATGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTGGGGAATCACGACACTCGAGCCTGTGTTTCGAATATTATGGTGAGAGACTCACTTATAAAAGTGACAGATAATGGGGTTAGGATCAAGACTTGGCAAGGTGGATCAGGGTCAGTATCTGGAGTGACATTCAGCAACATTCAGATGGTTAGTGTAAGAAATCCCATCATAATTGACCAATTCTACTGCCTCACAAGGGAGTGCACCAACAAGACCTCTGCAGTATCTGTATCAAATATTATTTACACAAACATAAAGGGGACTTATGATATAAGGAGCCCCCCTATGCGTTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTAACACTCTCAGAAATTGAGCTTCTTCCAGCTCAAGGAGACATAGTGCATGACCCTTTCTGTTGGAATGCATATGGAGATTTGGAGACACTAACCATTCCACCAGTCTCATGCTTGCTGGAGGGCACTCCTCAATCCGTGTTAGATTTTGACATAAGTCGTTGCTGA 1320 0.4205 MSPRHYSHSKHKHPHSHKSSKHSKLAPPSPPHNENNNNASGVFDVRKFGAIGDGKTDDTESFKMAWDTACQSESAVNNILAPQGFSFLIRSTIFTGPCQGVLVLKVDGTLMPPDGPESWPKNNSRHQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKGPNGTTLPGTCDSPIAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCKNVHIESIYITAPKLSPNTDGIHIENTNNVKIYNSVISNGDDCVSIGSGCNDVDIKNITCGPGHGISIGSLGNHDTRACVSNIMVRDSLIKVTDNGVRIKTWQGGSGSVSGVTFSNIQMVSVRNPIIIDQFYCLTRECTNKTSAVSVSNIIYTNIKGTYDIRSPPMRFACSDSVPCTNLTLSEIELLPAQGDIVHDPFCWNAYGDLETLTIPPVSCLLEGTPQSVLDFDISRC 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02447 439 MobiDBLite consensus disorder prediction 1 42 - -
Spst1g02447 439 FunFam Polygalacturonase At1g48100 family 31 426 - -
Spst1g02447 439 SUPERFAMILY Pectin lyase-like 40 429 IPR011050 -
Spst1g02447 439 Gene3D - 28 425 IPR012334 -
Spst1g02447 439 MobiDBLite consensus disorder prediction 1 22 - -
Spst1g02447 439 PANTHER - 42 410 - -
Spst1g02447 439 Pfam Glycosyl hydrolases family 28 73 392 IPR000743 GO:0004650|GO:0005975
Spst1g02447 439 ProSitePatterns Polygalacturonase active site. 263 276 IPR000743 GO:0004650|GO:0005975
Spst1g02447 439 SMART pbh1 286 307 IPR006626 -
Spst1g02447 439 SMART pbh1 315 336 IPR006626 -
Spst1g02447 439 SMART pbh1 256 276 IPR006626 -
Spst1g02447 439 SMART pbh1 206 232 IPR006626 -
Spst1g02447 439 SMART pbh1 233 254 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02447 Spst-Chr1 33166866 33171417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02447 37 439 Glycoside Hydrolase AT1G02460 69.458 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02447 - - gmx:100778836 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02447 1 33166866 33171417 Spst1g02447 1 33166866 33171417 ECH
Spst1g02447 1 33166866 33171417 Spst7g01403 7 60573559 60575397 ECH
Spst6g01496 6 14027920 14030445 Spst1g02447 1 33166866 33171417 ECH
Spst1g02447 1 33166866 33171417 Spst7g01403 7 60573559 60575397 PCT