Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00505 ATGGCATCATCATCCTCAAGGTTCCTTAAAACATCTCTGTCTTTTATGTTCTTCTTCCTCCTCTTCAATAATATTCTACCTTCTTTCTCCTTTCCAACTCACCCCACAACCAGTGACCTTAGTTTTTCTTCAACAGCAGAAAAACTCATAAGAGGCCTCAACCTGTTTCCAAAAGACCCCATTAACACACTCGAGAATGACCATCTTCTTGTGCCAGGAAACATTGTGGAGAAGAAGTTAACTTTCCCTAGTCTTGCTGTTCCAGGGTCTTCTGTTGAAGAACTTGGTCACCATGCAGGCTATTATCGTCTTCCTCGTTCCAAAGCTGCAAGGATGTTCTACTTTTTCTTTGAATCTCGAAACAGAAAGGATGATCCCGTTGTCATATGGTTGACTGGAGGACCAGGATGCAGCAGTGAACTAGCTTTGTTTTACGAAAATGGTCCTTTTCAGCTTACCAAGAACTTGTCTCTTGTGTGGAATGACTATGGCTGGGACAAGGCATCAAATATTATATTTGTTGACCAACCCACTGGAACGGGGTTCAGCTATACTTCTGATGAGAGCGACATTCGCCATGATGAAGAGGGTGTTAGTAATGATTTGTATGACTTCTTGCAGGCATTTTTCAAGGAGCACCCTCGATTCACCAAGAATGACTTTTATATTACTGGAGAGTCATATGCTGGACACTACATTCCAGCTCTTGCATCCAGGGTTCACCAAGGAAACAAAGCAAAAGAAGGAATTCATATAAATCTAAAGGGTTTTGCTATTGGTAATGGATTAACCAATCCTGAAATTCAGTACCAGGCATATACAGACTATGCATTAGACAGAGGACTAATTGAAAAGGCCGACTATAATAGCATCAACAAGTTGCTCCCAGCATGCAAGCATGCCATAGAAGCTTGCGGCACTGAAGGTGGAGAAACCTGTTTATCTTCATTATATATTTGCAACAAGATATTCAATGAGATAATGAGCATTGCTGGCGATGTTAATTACTATGACATAAGAAAGAAATGTGTGGGAGATCTGTGTTATGACTTCTCTGAGATGGAGGAATTCTTAAACATGAAGACAGTGAGAGATGCTTTAGGTGTTGGTGACTTGGACTTCGTTTCATGCAGTAGCACAGTGTACAGTGCTATGATGCAAGATTGGATGAGAAATCTAGAAGTGGGAATTCCCGCACTTCTTGAGGATGGAATGAGGGTGCTCGTGTATGCTGGAGAAGAAGATCTCATATGCAATTGGCTTGGGAATTCAAGGTGGGTTCAAGCAATGAAGTGGTCTGGTCAAAAAGAATTTGTGGCGTCTGGTACAGTCCCATTTTTGGTCGATGGTGCAGAAGCAGGAACGCTGAAAAGCCACGGACCTCTCGCTTTCCTGAAGGTATACGAGGCTGGTCACATGGTGCCAATGGATCAACCAAAAGCTGCACTTGCAATGCTAACAAACTGGATGCAAGGGAAACTGACAATGACAAAGAATGGAGATAATGTCTCTCCTAAATAA 1521 0.4221 MASSSSRFLKTSLSFMFFFLLFNNILPSFSFPTHPTTSDLSFSSTAEKLIRGLNLFPKDPINTLENDHLLVPGNIVEKKLTFPSLAVPGSSVEELGHHAGYYRLPRSKAARMFYFFFESRNRKDDPVVIWLTGGPGCSSELALFYENGPFQLTKNLSLVWNDYGWDKASNIIFVDQPTGTGFSYTSDESDIRHDEEGVSNDLYDFLQAFFKEHPRFTKNDFYITGESYAGHYIPALASRVHQGNKAKEGIHINLKGFAIGNGLTNPEIQYQAYTDYALDRGLIEKADYNSINKLLPACKHAIEACGTEGGETCLSSLYICNKIFNEIMSIAGDVNYYDIRKKCVGDLCYDFSEMEEFLNMKTVRDALGVGDLDFVSCSSTVYSAMMQDWMRNLEVGIPALLEDGMRVLVYAGEEDLICNWLGNSRWVQAMKWSGQKEFVASGTVPFLVDGAEAGTLKSHGPLAFLKVYEAGHMVPMDQPKAALAMLTNWMQGKLTMTKNGDNVSPK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00505 506 ProSitePatterns Serine carboxypeptidases, serine active site. 223 230 IPR018202 GO:0004185
Spst5g00505 506 FunFam Carboxypeptidase 84 502 - -
Spst5g00505 506 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 91 479 IPR001563 GO:0004185|GO:0006508
Spst5g00505 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 462 475 IPR001563 GO:0004185|GO:0006508
Spst5g00505 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 173 IPR001563 GO:0004185|GO:0006508
Spst5g00505 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 184 IPR001563 GO:0004185|GO:0006508
Spst5g00505 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 209 234 IPR001563 GO:0004185|GO:0006508
Spst5g00505 506 Pfam Serine carboxypeptidase 94 492 IPR001563 GO:0004185|GO:0006508
Spst5g00505 506 Gene3D alpha/beta hydrolase 77 504 IPR029058 -
Spst5g00505 506 SUPERFAMILY alpha/beta-Hydrolases 94 496 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00505 Spst-Chr5 3995242 3998614 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00505 K16298 - gmx:100785987 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00505 5 3995242 3998614 Spst5g00505 5 3995242 3998614 ECH
Spst5g00505 5 3995242 3998614 Spst11g01299 11 37401380 37403605 PCT
Spst11g01298 11 37398536 37401094 Spst5g00505 5 3995242 3998614 PCT