Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00444 ATGGCAACGGATTCTTCTAATGGTAATGGACATCAGCAGACAACAACCAAAAAACCTCCTTCACCATCTCCCCTGCGCTTTTCCAAGTTTTTTCAGTCCAACATGAGAATCTTGGTCACCGGAGGAGCTGGATTCATTGGATCTCACCTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGACAACCTTCAAAAATGGATTGGCCATCCGAGATTTGAGCTTATCCGTCATGATGTTACGGAGCCTTTGTTGATTGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTGAAGACTATAAAGACTAATGTGATAGGAACACTGAATATGCTTGGGCTTGCAAAACGAGTAGGAGCAAGGATTTTGCTTACATCAACTTCAGAGGTATATGGAGATCCTCTTGTGCATCCCCAACCTGAAAGCTATTGGGGCAATGTTAACCCTATTGGAGTTCGTAGTTGTTATGATGAGGGGAAACGGGTGGCTGAGACTTTGATGTTTGATTACCATAGGCAGCATGGGATTGAAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATCGATGATGGGCGTGTTGTTAGCAACTTCATTGCTCAGGCACTTCGGGGAGAACCCTTGACAGTCCAATGTCCAGGAACACAAACTCGAAGTTTCTGCTACGTCTCTGACCTGGTTGATGGGCTTATCCGCCTCATGGAAGGACCCAGCACTGGGCCAATCAACCTTGGAAACCCTGGTGAATTTACAATGATTGAACTTGCTGAGACTGTGAAAGAGCTTATTAATCCAAGTGTTGAGATCAAGATGGTGGAGAACACTCCTGATGATCCGCGACAAAGAAAACCAGACATAACCAAAGCAAAAGAATTGTTGGGATGGGAGCCAAAGGTGAAGTTGAGGGATGGTCTTCCTCTAATGGAAGAGAATTTCCGTCTGAGGCTTGGACGTGATAAGAAAATTGGTACCAAAGATGGAAACAAATTAGATGAAGCTACATGA 1083 0.4367 MATDSSNGNGHQQTTTKKPPSPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLQKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQCPGTQTRSFCYVSDLVDGLIRLMEGPSTGPINLGNPGEFTMIELAETVKELINPSVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEENFRLRLGRDKKIGTKDGNKLDEAT 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00444 360 CDD UGD_SDR_e 35 339 - -
Spst5g00444 360 FunFam UDP-glucuronic acid decarboxylase 6 34 343 - -
Spst5g00444 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 339 IPR036291 -
Spst5g00444 360 Pfam GDP-mannose 4,6 dehydratase 38 332 IPR016040 -
Spst5g00444 360 Gene3D - 163 342 - -
Spst5g00444 360 Gene3D - 32 162 - -
Spst5g00444 360 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 18 344 IPR044516 GO:0042732|GO:0048040|GO:0070403
Spst5g00444 360 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00444 Spst-Chr5 3499650 3504408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00444 32 351 Miscellaneous Gene Families AT1G02000 24.789 7.43e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00444 K08678 - gmx:100790835 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00444 5 3499650 3504408 Spst5g00444 5 3499650 3504408 ECH
Spst5g00444 5 3499650 3504408 Spst2g02283 2 21962400 21969802 PCT
Spst2g02284 2 21974831 21979185 Spst5g00444 5 3499650 3504408 PCT