Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00371 ATGGCTTTTCTATTTGCTTTTGTTGCAATTGTGCTGTGGGGTTGCGCTGAGGGTAAAGAGTGCACAAACAGTATTGGTCAATCACATACTTACCGTTACCAGTTATTAACATCCACAAATGAAACTTGGAACATAATGTCACATTATAATTTTGCTCCAAAGGATGACCATGACCACCTTTGGGCTGATTTGCTACCAAGGAAGTTGTTGAAAGAGGAAGACCAACATGATTGGGGTGTGATTTTGAGGAGAATTGAGAAAGTGGGTGTGTTGAAGCCACCCCACCAACGCCAAGATTTTCTCAAACAAGTGTCTCTGCATGATGTGAGATTGCATGAGGGTTCGGTCCATGCTCGGGCACAACAGACAAACTTAGAGTATCTGTTGATGTTGGATGTGGACAGGTTACTCTGGAGCTTTAGGAAGACAGCTGGTCTTCCAACTCCTGGAAAACCATATGGAGGGTGGGAAGATCCAAAAGTAGAGCTTCGGGGTCATTTTGTTGGGCACTATTTGAGTGCATCAGCTTTAATGTGGGCTAGCACACATAATGATAGCCTGAAGAAGAAAATGTCAGCTCTTGTTGCCAATCTGTCCCTTTGTCAGGAGAAAATTGGTACAGGATATCTATCTGCCTTTCCATCTGAATTTTTTGATCGATTTGAAGCTATTAAGCATGTTTGGGCTCCCTATTACACCATCCACAAGATCTTGGTTGGCCTTCTGGATCAACATTCTATAGCTAAAAATCCTCAAGCTCTAAATATGGTGAAATGGATGGTAGATTACTTTTACAACCGAGTGCAGAATGTTATAACAAAGTTTAGTATAAGTAGACACTATAAGTCACTGAATGAAGAGACTGGAGGCATGAATGATGTCCTTTACAAACTATACAGCATAACGGGAGATAAAAGGCATCTTCTGTTAGCTCACCTTTTTGACAAGCCATGCTTTTTAGGGTTGCTTGCAATGAAGGCTAATGATATAGCTGGGTTTCATGCTAACACACATATCCCAGTAGTTGTTGGATCTCAAATGAGGTATGAAGTCACCGGTGATCCACTCTATAAGGAAATAGGAACATTCTTTATGGATCTTGTTAACTCTTCTCATACTTATGCAACTGGAGGGACGTCAGTCAACGAATTTTGGGGTGATCCAAAGAGAATTGGAGACACCCTAGAATCAACCAACAATGAGGAATCATGCACAACTTACAATATGTTGAAGGTTTCACGCCACTTGTTTAGATGGACCAAAAAGGTATCGTATGCAGATTATTATGAGCGTGCCTTAACAAATGGTGTATTAAGCATTCAAAGAGGAACAGAACCTGGAGTGATGATATATATGCTTCCACAAGGTCGCGGGGTTTCCAAGGCTAAAACTGACCTTGGTTGGGGAACGAAGTTTGCTAGTTTCTGGTGCTGCTATGGAACAGGAATTGAATCATTCTCAAAGCTGGGAGATTCTATCTATTTTGAAGGAGGGAAAAATCCTACTCTTTACATCATCCAGTACATATCAAGCTTATTTAATTGGAAGTCTGGGCAAATTATTGTTAATCAGACAGTTGTTCCGGCTGTTTCATGGGATCCTTTCCTACGAGTGTCATTTACATTTTCTCCAGCTAAGAAAAATGGTGCTTTGTCTACACTTAACTTCAGACTACCAACTTGGACGCATAAGGATGGTGCAAAGGGTATATTGAATAATGAGTCTTTATCTCTACCAACCCCAGGAAACTTTTTGTCTATCACCAGAAAATGGAATGCTGGTGACAAGTTAAGCCTTCAATTTCCCATGATCCTCAGAACCGAAGCCATAAAAGATGACAGGTCTCAATATGCCTCTGTTCAAGCAATTCTTTATGGTCCTTATCTTCTTGCTGGTCACACCACTGGTGATTGGGACATCAAAGTTGCACCAAATGCATCTTTAGAAGACTGGATTACTCCAATTCCAGCCAGCTACAACAGTCAGTTATTCTATTTTTCCCAAACCTTTGCTAACTCAACTTATGTTTTGACAAAGTCAAACGAACCATTAGCAATGAAAAAATTACCTGTGCCTGGAACTGATTTGGCCCTTCATGCTACTTTTAGAGTTATCCCCGGAAAATTTTCGACTGAGTTTACCACATTGACAGATGCTATTGGTAAAACAGTAATGCTAGAACCATATGATCATCCGGGAATGCGACTGATTCACCAAGGAATGGAACATCCTCTTACCGTAATAGGCTCTTCCTATGGTGGACCCTCTTGTATTTTTCTTGTGGTCCCAGGGTTGGATGGACGAAAGGAAACCATATCTTTGGAATCCAAAAGCCATAATGGTTGCTTTGTGCATAGTGGTTTGCATTCAGGTAGTGGAGTGAAACTCAGTTGCAGGACTTCTGCTGATCGTACATTTAAACAATCAGCAAGTTTTATTGCCAAAAGAGGAATAAGCAAATACAATCCTATCAGCTTCGTGGCCAAAGGGTTAAACAAGAATTTTCTTCTGGAGCCGTTATTGGCCTTCAGAGACGAGTCTTATACGGCTTATTTCAACATTAAAGGTTGA 2571 0.4084 MAFLFAFVAIVLWGCAEGKECTNSIGQSHTYRYQLLTSTNETWNIMSHYNFAPKDDHDHLWADLLPRKLLKEEDQHDWGVILRRIEKVGVLKPPHQRQDFLKQVSLHDVRLHEGSVHARAQQTNLEYLLMLDVDRLLWSFRKTAGLPTPGKPYGGWEDPKVELRGHFVGHYLSASALMWASTHNDSLKKKMSALVANLSLCQEKIGTGYLSAFPSEFFDRFEAIKHVWAPYYTIHKILVGLLDQHSIAKNPQALNMVKWMVDYFYNRVQNVITKFSISRHYKSLNEETGGMNDVLYKLYSITGDKRHLLLAHLFDKPCFLGLLAMKANDIAGFHANTHIPVVVGSQMRYEVTGDPLYKEIGTFFMDLVNSSHTYATGGTSVNEFWGDPKRIGDTLESTNNEESCTTYNMLKVSRHLFRWTKKVSYADYYERALTNGVLSIQRGTEPGVMIYMLPQGRGVSKAKTDLGWGTKFASFWCCYGTGIESFSKLGDSIYFEGGKNPTLYIIQYISSLFNWKSGQIIVNQTVVPAVSWDPFLRVSFTFSPAKKNGALSTLNFRLPTWTHKDGAKGILNNESLSLPTPGNFLSITRKWNAGDKLSLQFPMILRTEAIKDDRSQYASVQAILYGPYLLAGHTTGDWDIKVAPNASLEDWITPIPASYNSQLFYFSQTFANSTYVLTKSNEPLAMKKLPVPGTDLALHATFRVIPGKFSTEFTTLTDAIGKTVMLEPYDHPGMRLIHQGMEHPLTVIGSSYGGPSCIFLVVPGLDGRKETISLESKSHNGCFVHSGLHSGSGVKLSCRTSADRTFKQSASFIAKRGISKYNPISFVAKGLNKNFLLEPLLAFRDESYTAYFNIKG 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00371 856 SUPERFAMILY AbfB domain 754 837 IPR036195 GO:0046373|GO:0046556
Spst5g00371 856 SUPERFAMILY Six-hairpin glycosidases 165 448 IPR008928 GO:0005975
Spst5g00371 856 Gene3D - 716 839 - -
Spst5g00371 856 Pfam Beta-L-arabinofuranosidase, GH127 108 631 IPR012878 -
Spst5g00371 856 PANTHER PROLINE-TRNA LIGASE (DUF1680) 16 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00371 Spst-Chr5 3064122 3069416 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00371 K09955 - gmx:100791803 1297.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00371 5 3064122 3069416 Spst5g00371 5 3064122 3069416 ECH
Spst5g00371 5 3064122 3069416 Spst2g02377 2 23387679 23392926 PCT
Spst2g02378 2 23399628 23406021 Spst5g00371 5 3064122 3069416 PCT