Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02378 ATGAAGGGTTTCGTGTTTGCGTTTGTGGCCCTTGTGTTGTGTGGTAGTGCAGTTGGTAAAGAATGCACAAACATTCCCACTCAATCTCATACCTTGAGGTATGAGCTATTGACATCGAAGAATGAAACGTGGAAGGAAGAGGTGATGTCTCACTACCATTTGACGCCAACGGATGAATCGGCGTGGGCTGATATGCTGCCGAGGAAGTTCTTGTCAGAAAAACAACAACATGATTGGGCGGTGATGTATAAGAAAATTAAGAACATGGGTGTGTTCAAGTCACCAGAAGGATTTCTGAAAGAAGTTCCTCTTGAGGATGTGAGGTTGCATGAGGATTCCATCCATGGCAGAGCACAGCAAACAAACTTGGAGTATATTTTGATGTTTGATGTGGACAGTTTGATTTGGAGCTTCAGGAAGACAGCTGGTTTACCCACTCCTGGTACTCCTTACGGTGGGTGGGAAAAACCTGATGGCGAGCTTCGGGGTCATTTTGTTGGGCATTACTTGAGTGCATCAGCTCTAATGTGGGCCAGCACACAGAATGATAGCCTACATCAGAAAATTACATCTCTTGTTGCTGGTCTGGCTGCCTGTCAGCAAAAAATTGGAACTGGATATCTATCTGCATTTCCGTCTGAGTTTTTTGATAAATTTGAAGCTATTGAACAAGTTTGGGCTCCATATTATACCATTCACAAGATTTTGGCTGGTCTCTTGGATCAACATACATTTGCTGGAAACTCTCAAGCTCTAAAAGTGGTAACATGGATGGTTGATTACTTCTACAACAGAGTGCAGAACGTAATAAAAATTTACACTATAAATAGACACTATCAATCACTGAACGAGGAAACTGGAGGAATGAATGATGTCCTTTACAGATTATACAGCATAACTGGAGATTCTAAGCATCTATTGTTGGCTCAACTTTTTGACAAGCCGTGCTTTTTGGGGTTACTTGCAGTGCAGGCTAATGACATAGCTGAGTTGCATGCTAATACACATATCCCCATTGTTGTTGGAGCCCAAAGGCGTTATGAAATCACAGGCGATCCACTTTATAAGGATATGGGGATATTCTTTATGGACACCATAAACTCTTCTCACAGCTATGCAACTGGAGGGACATCTGTCAACGAGTTCTGGAGTGATCCAAAGAGAATAGCAGATAACTTAAAAACAACAGAGAATGAAGAATCATGTTCAACTTATAATATGTTAAAGGTTTCACGCCACCTCTTTAGATGGACCAAAGAAGTCTCCTATGCAGACTATTATGAGCGTGCCTTAACCAATGGAGTGCTGAGCATTCAAAGAGGAACAGATCCTGGAGTGATGATTTATATGCTTCCACTAGGTCTTGGGGTTTCCAAGGCTAAAACTATCCACAGTTGGGGAACACCATTTGACTCTTTCTGGTGCTGCTATGGAACGGGAATTGAATCATTCTCAAAGTTGGGAGATTCTATATATTTCGAAGAGGAAGGGAAAAATCCTACACTTTATGTCATTCAGTACATATCAAGCTCATTTAATTGGAAATCTGGTAAAGTTTTGATCAATCAGACAGTTGTTCCAGCAGCTTCATGGGATCCTTACCTCCGAGTAACATTTACGTTTTCTCCTGTTGAGAATACTTTGTCTACATTGAACTTTCGATTCCCTACTTGGAGTCGTCTGCCTGGTGCCAAGGGGATATTAAATGGTGAAACTTTATCTCTTCCAGCCCCAGGAAACTTTTTCTCAATCACAAGAAAGTGGAATGCTGGTGACAAGCTGACCCTTCAGTTGCCCCTTACCTCAAGAACAGAGGCCATAAAAGATGATAGGCCCGAATATGCATATGTTCAAGCGATTCTTTATGGTCCTTATCTTCTTGCTGGTCATACCCTCGGTGGTGATTGGGACCTTAAATCTGTGGCTAACAGTTCGGACTGGATTACTCCTATTCCTGACAACTACAATAGTCAACTAGTTTCTTTATCCCAATACTTTGAAAATTCAACTTTTGTTTTGGCAAATTCAAACCAATCACTTGGAATGCAAAAGCTTCCTGAATCTGGCACTGATTTGGGTCTTCAGGCAACCTTTAGGCTTGTTCAAAACGAATCTTCCTCAAAGTTTTCAACATTGGCAGATACTAATGTTAGGTCGGTGACGTTAGAACCATTTGATCTTCCTGGAATGAATGTGATTCACCAAGGAGCAGACAAACCTCTTGTCATTGTAGATTCTTCCCATGGGGGTCCATCTTCTGTTTTTCTTGTGGTACCAGGATTGGATGGAAGAAATGAAACCATATCTTTAGAATCACAGAGCAACAAGGGCTGTTATGTGTATAGTGGTTTGAGCTCTAGTGCAGGAGTCAAGCTCAGTTGCAAATCTGGTTCTGATGCTACTTTTAACCAAGCAACAAGCTTTGTTTCTCAAAAAGGATTGAGCCAATACAATCCTATCAGTTTTGTGGCTAAAGGGGCAAACAGGAACTTTCTGTTGGAGCCATTATTCTCATTCAGAGATGAACATTACACAGTTTATTTCAACATTAAAGGTTGA 2559 0.4127 MKGFVFAFVALVLCGSAVGKECTNIPTQSHTLRYELLTSKNETWKEEVMSHYHLTPTDESAWADMLPRKFLSEKQQHDWAVMYKKIKNMGVFKSPEGFLKEVPLEDVRLHEDSIHGRAQQTNLEYILMFDVDSLIWSFRKTAGLPTPGTPYGGWEKPDGELRGHFVGHYLSASALMWASTQNDSLHQKITSLVAGLAACQQKIGTGYLSAFPSEFFDKFEAIEQVWAPYYTIHKILAGLLDQHTFAGNSQALKVVTWMVDYFYNRVQNVIKIYTINRHYQSLNEETGGMNDVLYRLYSITGDSKHLLLAQLFDKPCFLGLLAVQANDIAELHANTHIPIVVGAQRRYEITGDPLYKDMGIFFMDTINSSHSYATGGTSVNEFWSDPKRIADNLKTTENEESCSTYNMLKVSRHLFRWTKEVSYADYYERALTNGVLSIQRGTDPGVMIYMLPLGLGVSKAKTIHSWGTPFDSFWCCYGTGIESFSKLGDSIYFEEEGKNPTLYVIQYISSSFNWKSGKVLINQTVVPAASWDPYLRVTFTFSPVENTLSTLNFRFPTWSRLPGAKGILNGETLSLPAPGNFFSITRKWNAGDKLTLQLPLTSRTEAIKDDRPEYAYVQAILYGPYLLAGHTLGGDWDLKSVANSSDWITPIPDNYNSQLVSLSQYFENSTFVLANSNQSLGMQKLPESGTDLGLQATFRLVQNESSSKFSTLADTNVRSVTLEPFDLPGMNVIHQGADKPLVIVDSSHGGPSSVFLVVPGLDGRNETISLESQSNKGCYVYSGLSSSAGVKLSCKSGSDATFNQATSFVSQKGLSQYNPISFVAKGANRNFLLEPLFSFRDEHYTVYFNIKG 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02378 852 PANTHER PROLINE-TRNA LIGASE (DUF1680) 17 850 - -
Spst2g02378 852 Pfam Beta-L-arabinofuranosidase, GH127 106 628 IPR012878 -
Spst2g02378 852 SUPERFAMILY AbfB domain 718 833 IPR036195 GO:0046373|GO:0046556
Spst2g02378 852 Coils Coil 851 852 - -
Spst2g02378 852 Gene3D - 710 840 - -
Spst2g02378 852 SUPERFAMILY Six-hairpin glycosidases 150 438 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02378 Spst-Chr2 23399628 23406021 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02378 K09955 - gmx:100791803 1507.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02378 2 23399628 23406021 Spst5g00371 5 3064122 3069416 PCT