Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00299 ATGGAGAAGGCGTTTGGAATTTTCGGAGGAGGGAACAAGCAGAAGATAAAGGGGACAGTGGTGTTGATGCGGAAGAATGTGTTGGACATCAACAGCATCACCAACCCTTCCACCGTCGTCGACACCATCTTCGACATCTTCGGCACCGCCATCGACACTGTCACTGCTTTTGCCACCTCCATCTCCATCCAGTTGATCAGTGCTACCAAGCCTGACGGGAAGGGGAAAGGAAAAACTGGAAGTGCTACAAAGTTAAGAGGGCAGATATCATTGCCAACCTTGGGAGCTAAGGAAGAAGCATACGATGTTGATTTTGAATGGGAGACTGACTTGGGAATTCCTGGTGCATTTTACATTAAGAACTTCATGCAAAATGAGTTCTACCTCAAGTCTGTCACTCTCGAAGACATTCCCAACCAAGGAACCATTCACTTCATATGCAACTCCTGGATTTACAATTCCAATTCATACAAGACTGATCGCATTTTCTTTTCCAACAACACATATCTTCCTAGCGATACACCGGCCCCTCTTGTGAGTTACAGAGAAGAAGAGTTGAAGAATGTAAGAGGGAATGGAACTGGAGAACGCAAGGAATCGGATAGGATCTATGATTATGATGTCTACAATGATTTGGGTGACCCAGATAAAAATGCCCAGTTGGCTCGCCCCGTTCTTGGAGGTTCTGCCTTACCTTATCCTCGTAGAGGAAGAACCGGAAGAGGAAAAACTAAAAAAGATCCTAACAGTGAGAAGCCGAGCGCCTTTGTTTACCTTCCAAGAGATGAAGCATTTGGTCACTTGAAGTCATCGGATTTTCTCGTTTATGCATTGAAGTCTGTATCACAAGATGTGCTGCCTGTGTTGACTGATGCATTCGATGGAAGCCTTTTGAGCCTTGAGTTTGATAATTTCGAGGAAGTGCGCAAGCTTTATGAAGGTGGAGTTACACTGCCTACAAATTTTCTTAGCAAATACGCTCCTATACCAGTTCTCAAGGAAATTTTTCGAACTGATGGCGAACAGTTCCTCAAGTATCCACCACCTAAAGTCATGCAAGTGGATAAGTCTGCATGGATGACCGATGCAGAATTTGCTAGAGAAACCATTGCTGGTGTCAATCCTAATGTTATTAAGATTCTTGAGGAGTTTCCACCACGTAGCAAGCTAGACACTCAAGCCTATGGTGATCATACCTGTATAATAACAAAAGAACATTTGGAGCCTAACTTAGGCGGGCTCACTGTTGAGCAGGCTATCGAGAACAAGAAGTTGTTCATCTTAGATCACCATGACTATCTCATTCCATATTTGAGGAGAATAAATTCATCTACCACAAAGACTTATGCTACAAGAACCATATTTTTCTTGAAAGATGATGGAACTTTGACACCATTGGCAATTGAGTTAAGTAAGCCGCATGGTCAGGGTGACGAATATGGTCCTCTTAGCGAAGTTTATGTGCCTGCGTACGAAGGAGTTGAAGCTTACATTTGGTTATTGGCAAAGGCTTATGTTGTTGTGAACGATTCGTGCTACCACCAAATCGTTAGTCATTGGCTAAACACTCATGCCGTTGTTGAGCCTTTCGTCATAGCAACAAACAGGCAACTGAGTGTGGTTCACCCTATTTACAAACTTCTTTTTCCTCACTATCGTGACACCATGAACATTAATTCACTTGCCCGCAAGTCCTTGGTCAATGCAGACGGTATTATAGAGCAAACATTCTTGTGGAGTAGGTACTCTTTGGAAATGTCCGCTGTGATTTACAAAGACTGGGTTTTCAGCGATCAAGCATTACCCAATGATCTTGTCAAGAGGCTTGATACAACTGTGGTGCTAATCAATGTTATTTGGATGCACAGAGGAGTTGCTGTTAAAGATCCATCTGCTCCTCACGGTGTTAAGCTTTTGATTGAGGATTATCCATATGCTTCTGATGGGCTAGAGATATGGGATGCCATCAAGTCCTGGGTGCAAGAATATGTCGCATTCTACTACAAGTCGGATGAGGTACTTCAAAAAGACCCTGAACTCCAAGCTTGGTGGAAAGAACTTGTTGAGGTGGGTCACGGTGATTTGAAAGATAAGCCATGGTGGCCAAAGATGCAAACACGTGAAGAGTTGGTTGAAGCCTCTGCTACCCTCATATGGATTGCTTCAGCCCTTCACGCAGCAGTTAACTTTGGACAGTATCCATATGGTGGTTTAATCCTTAACAGGCCAACTATTAGCAGAAGATTCATGCCTGAGAAAGGTTCTGCTGAGTATGTTGCATTGGGTAAGAACCCTGAGAAGGAGTTTTTGAAAACTATTACTGGCAAGAAAGAGACCCTCATTGACCTTACGGTTATAGAGATCTTGTCAAGGCACACATCTGATGAGTTCTACCTTGGGGAGAGAGATGGTGGTGACTATTGGACTTCTGATACCGTGCCATTGGAGGCCTTTAAGAGGTTCGGAAAGAAGCTTGCAGAGATTGAAGAGAAGCTTGTACAGAAGAACAATGACGAGACATTGAGAAACCGCACTGGTCCAGCTAAAATGCCTTACACTCTGCTCTTTCCTTCTAGTGAGGAGGGATTGACTTTCAGAGGAATTCCCAACAGTATCTCTATCTAA 2625 0.4362 MEKAFGIFGGGNKQKIKGTVVLMRKNVLDINSITNPSTVVDTIFDIFGTAIDTVTAFATSISIQLISATKPDGKGKGKTGSATKLRGQISLPTLGAKEEAYDVDFEWETDLGIPGAFYIKNFMQNEFYLKSVTLEDIPNQGTIHFICNSWIYNSNSYKTDRIFFSNNTYLPSDTPAPLVSYREEELKNVRGNGTGERKESDRIYDYDVYNDLGDPDKNAQLARPVLGGSALPYPRRGRTGRGKTKKDPNSEKPSAFVYLPRDEAFGHLKSSDFLVYALKSVSQDVLPVLTDAFDGSLLSLEFDNFEEVRKLYEGGVTLPTNFLSKYAPIPVLKEIFRTDGEQFLKYPPPKVMQVDKSAWMTDAEFARETIAGVNPNVIKILEEFPPRSKLDTQAYGDHTCIITKEHLEPNLGGLTVEQAIENKKLFILDHHDYLIPYLRRINSSTTKTYATRTIFFLKDDGTLTPLAIELSKPHGQGDEYGPLSEVYVPAYEGVEAYIWLLAKAYVVVNDSCYHQIVSHWLNTHAVVEPFVIATNRQLSVVHPIYKLLFPHYRDTMNINSLARKSLVNADGIIEQTFLWSRYSLEMSAVIYKDWVFSDQALPNDLVKRLDTTVVLINVIWMHRGVAVKDPSAPHGVKLLIEDYPYASDGLEIWDAIKSWVQEYVAFYYKSDEVLQKDPELQAWWKELVEVGHGDLKDKPWWPKMQTREELVEASATLIWIASALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSAEYVALGKNPEKEFLKTITGKKETLIDLTVIEILSRHTSDEFYLGERDGGDYWTSDTVPLEAFKRFGKKLAEIEEKLVQKNNDETLRNRTGPAKMPYTLLFPSSEEGLTFRGIPNSISI 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00299 874 FunFam Lipoxygenase 170 268 - -
Spst5g00299 874 SUPERFAMILY Lipoxigenase 170 874 IPR036226 -
Spst5g00299 874 MobiDBLite consensus disorder prediction 227 254 - -
Spst5g00299 874 SMART LH2_4 14 166 IPR001024 GO:0005515
Spst5g00299 874 Gene3D - 358 491 - -
Spst5g00299 874 Pfam PLAT/LH2 domain 69 164 IPR001024 GO:0005515
Spst5g00299 874 FunFam Lipoxygenase 358 491 - -
Spst5g00299 874 ProSitePatterns Lipoxygenases iron-binding region signature 1. 514 528 IPR020833 GO:0016702|GO:0046872
Spst5g00299 874 Gene3D - 170 268 - -
Spst5g00299 874 PRINTS Plant lipoxygenase signature 344 360 IPR001246 GO:0016491
Spst5g00299 874 PRINTS Plant lipoxygenase signature 383 402 IPR001246 GO:0016491
Spst5g00299 874 PRINTS Plant lipoxygenase signature 135 153 IPR001246 GO:0016491
Spst5g00299 874 PRINTS Plant lipoxygenase signature 299 320 IPR001246 GO:0016491
Spst5g00299 874 PRINTS Plant lipoxygenase signature 232 251 IPR001246 GO:0016491
Spst5g00299 874 PRINTS Plant lipoxygenase signature 161 182 IPR001246 GO:0016491
Spst5g00299 874 PRINTS Plant lipoxygenase signature 786 800 IPR001246 GO:0016491
Spst5g00299 874 PRINTS Plant lipoxygenase signature 449 473 IPR001246 GO:0016491
Spst5g00299 874 PRINTS Plant lipoxygenase signature 200 216 IPR001246 GO:0016491
Spst5g00299 874 ProSiteProfiles PLAT domain profile. 39 165 IPR001024 GO:0005515
Spst5g00299 874 Pfam Lipoxygenase 178 857 IPR013819 GO:0016702|GO:0046872
Spst5g00299 874 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 14 169 IPR036392 GO:0005515
Spst5g00299 874 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 168 874 IPR013819 GO:0016702|GO:0046872
Spst5g00299 874 PRINTS Lipoxygenase signature 514 531 IPR013819 GO:0016702|GO:0046872
Spst5g00299 874 PRINTS Lipoxygenase signature 496 513 IPR013819 GO:0016702|GO:0046872
Spst5g00299 874 PRINTS Lipoxygenase signature 534 554 IPR013819 GO:0016702|GO:0046872
Spst5g00299 874 FunFam Lipoxygenase 493 873 - -
Spst5g00299 874 Gene3D PLAT/LH2 domain 9 169 - -
Spst5g00299 874 Gene3D - 492 873 - -
Spst5g00299 874 CDD PLAT_LH2 15 166 IPR042057 -
Spst5g00299 874 Gene3D - 269 357 IPR027433 -
Spst5g00299 874 PANTHER LIPOXYGENASE 13 874 IPR000907 GO:0016702|GO:0034440|GO:0046872
Spst5g00299 874 ProSitePatterns Lipoxygenases iron-binding region signature 2. 541 551 IPR020834 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00299 Spst-Chr5 2590157 2594623 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00299 9 874 Acyl Lipid Metabolism Gene Families AT1G55020 56.852 0.0 1001
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00299 K15718 - gmx:100803358 1516.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00299 5 2590157 2594623 Spst4g02211 4 62859367 62867994 PCT
Spst4g02213 4 62874200 62874946 Spst5g00299 5 2590157 2594623 PCT