Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02211 ATGGCTATTGAGGATTCATCTTCTCCTAATGGCCTTCGTCTTGTGATAGAGGACTACCCTTATGCTGTTGATGGACTTGAAATATGGAATGCTATTAAGACATGGGTCCAAGACTACGTCTCCTTGTACTATGGGACAGATGATGCAGTTGAAGAAGACCGTGAACTTAAAGCATGGTGGAAAGAAGTTATTGAGAAGGGCCATGCTGACTTAAAAGATGAGTCATGGTGGCCTAAACTACAGACTCGTCAAGAGTTGATCCAGTCCTGTAGTACTATTATATGGATTGCTTCGGCTCTTCATGCTGCTGTTAATTTTGGACAATATCCTTATGGTGGTTATATCCTTAATCGTCCAACTCTTAGCAGAAGATTGATCTCGGAAAAAGGAACTCCAGAATATGATGAGATGGTGACAAATCCGCAGAAGGCGTATTTGAAAACAATTACACCGAAGTATCAGACTCTTATTAACCTTTCAGTTATAGAAATATTGTCAAGACATACTTCTGATGAGGTCTACCTTGGACAGAGGGATGGTTCAAATTGGATCTCTAATCCAAAAGCAGTAGAAGGCTTTAAAAAATTCGGAAAAAACCTTGAAAACATTGAGAAAAAAATCTCAGAAAGAAATCATGATCCAAATCTTAGAAATCGAACTGGGCCAGCTCAATTGCCCTATACTGTGCTTCTTCCTACCAGTGAAACAGGTCTCTTTTCAATGGTGGTCAAGGGAAGGGTGGTGTTGATGCAGAAGAATGTGCTTGAAACTGTAACCGATGCCAAGGAGCTTGTTAGCTCTGCCATCAAACTAATGAGTTCATCAGTGGAATATGATATCACTAAATCAGTGTTTTTCAAGTTGATTAGTCGAACCAAATCCAACCATTGCTCAAGAGATGGAGCTGGGAAAGTTGGAAAGGAAACTTGTCTAGAGAATAATGTTTCTGTGTTACGAAGCTTGGGTGAGAGAAGAGAGGAATTCGATATTTATTTTGAATGGGATGCTGCTGAGATGGGAATTCCAGGAGCATTTTACGTTAAAAACTTGATGAATGATGAGTTCTTCCTTGCCAGTTTGACTCTTGAATATCCATTTCCAGCATGCCACCAGAACAAGGACAAAAACAAGATTCACTTTCCATATCTTCCTGGGAATCAGACACCAGGGACATTACGAAAGTACAGAGAAGAAGAGTTGAAGAGTTTAAGGGGAGATGGAACTGGACAGCGTCAGGAATGGGATAGGATTTATGATTATGATGTCTATAATGATTTGGGCTTTCTAGACAGTGATATACAACAGGATCACCCAATTCTTGGAGGCCCCCACTATCCCTACCCTCGTAGGGTTAGGACTGGGAGAAAACTCATCCACAACCCCAAGAATGGTAGCGAATACGAGGAACAAGGCCAGAATTATGTGCCAAGGGATGAAAAATTCAGTCACGTGAAGACATCAGGTTTCCTTGAATTTGGAAAGAAAACTTTAGCTGCAGGTGTCGAACCCTTGCTCGTATCTTTATATTTGAAGCTCACATCGAACGAGTTTAACAGCTTCGAAGAAGTGCAGAAAATGTATGAAGGTGGCATTACTCTCCCTGTATCTGTCACTGGCCCGGGTACTCAAAATGTTCTTCAGTTTCCACCACCTCGTGTAATTCAAGAAAGCAAGTTTGCATGGATGACTGATGAAGAGTTTACAAGAGAGATGATTGCTGGTGTAAACCCTTGTGTAATTCGCCTTCTTAAAAGGGAGGATCTTGCACCGCGAAGCAACCAAGATTGCCACTCTAATCAAGCTAGTACAATTACAAAAGAACAGTTGGAGATTAACATGGGTGGGATCACGGTAGATGAGGTAACGATATACACGGATTAA 1881 0.412 MAIEDSSSPNGLRLVIEDYPYAVDGLEIWNAIKTWVQDYVSLYYGTDDAVEEDRELKAWWKEVIEKGHADLKDESWWPKLQTRQELIQSCSTIIWIASALHAAVNFGQYPYGGYILNRPTLSRRLISEKGTPEYDEMVTNPQKAYLKTITPKYQTLINLSVIEILSRHTSDEVYLGQRDGSNWISNPKAVEGFKKFGKNLENIEKKISERNHDPNLRNRTGPAQLPYTVLLPTSETGLFSMVVKGRVVLMQKNVLETVTDAKELVSSAIKLMSSSVEYDITKSVFFKLISRTKSNHCSRDGAGKVGKETCLENNVSVLRSLGERREEFDIYFEWDAAEMGIPGAFYVKNLMNDEFFLASLTLEYPFPACHQNKDKNKIHFPYLPGNQTPGTLRKYREEELKSLRGDGTGQRQEWDRIYDYDVYNDLGFLDSDIQQDHPILGGPHYPYPRRVRTGRKLIHNPKNGSEYEEQGQNYVPRDEKFSHVKTSGFLEFGKKTLAAGVEPLLVSLYLKLTSNEFNSFEEVQKMYEGGITLPVSVTGPGTQNVLQFPPPRVIQESKFAWMTDEEFTREMIAGVNPCVIRLLKREDLAPRSNQDCHSNQASTITKEQLEINMGGITVDEVTIYTD 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02211 626 Gene3D PLAT/LH2 domain 244 381 - -
Spst4g02211 626 Gene3D - 559 624 - -
Spst4g02211 626 PANTHER LIPOXYGENASE 1 233 IPR000907 GO:0016702|GO:0034440|GO:0046872
Spst4g02211 626 Gene3D - 485 558 IPR027433 -
Spst4g02211 626 SUPERFAMILY Lipoxigenase 386 620 IPR036226 -
Spst4g02211 626 SUPERFAMILY Lipoxigenase 1 243 IPR036226 -
Spst4g02211 626 Gene3D - 1 243 - -
Spst4g02211 626 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 1 249 IPR013819 GO:0016702|GO:0046872
Spst4g02211 626 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 382 626 IPR013819 GO:0016702|GO:0046872
Spst4g02211 626 Pfam Lipoxygenase 392 621 IPR013819 GO:0016702|GO:0046872
Spst4g02211 626 Pfam Lipoxygenase 1 232 IPR013819 GO:0016702|GO:0046872
Spst4g02211 626 Gene3D - 383 484 - -
Spst4g02211 626 PRINTS Plant lipoxygenase signature 514 535 IPR001246 GO:0016491
Spst4g02211 626 PRINTS Plant lipoxygenase signature 414 430 IPR001246 GO:0016491
Spst4g02211 626 PRINTS Plant lipoxygenase signature 446 465 IPR001246 GO:0016491
Spst4g02211 626 SMART LH2_4 241 382 IPR001024 GO:0005515
Spst4g02211 626 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 243 364 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02211 Spst-Chr4 62859367 62867994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02211 243 621 Acyl Lipid Metabolism Gene Families AT1G55020 40.618 1.78e-74 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02211 K15718 - gmx:100802685 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00299 5 2590157 2594623 Spst4g02211 4 62859367 62867994 PCT