Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00297 ATGTTATTTGGGTGCAGAGGAGTTGCTGTTAAGGATCCATCTGCTCCCTATGGTGTTAAGCTTTTGATTGAAGATTATCCTTATGCTTCTGATGGGCTAGAGATATGGGAGGCTATCAAGTCTTGGGTGGAAGAATATATCTTATTCTACTACAAGACAGACGAGGCACTTCAGCAGGACCCCGAACTCCAAGCTTGGTGGAAAGAACTTGTTGAGGTGGGTCATGGTGATTTGAAAGATAAGCCATGGTGGCCAAAGATGCAAACTCGTGAAGAATTGGCTCAAGTCTGTACTACCCTCATTTGGATTGCTTCAGCCCTTCACGCTGCTGTTAACTTTGGACAATATCCATATGGTGGTTTAATCCTTAACAGGCCAACTATTAGCAGAAGATTCATGCCTGAGAAAGGTTCTGCTGAGTATGTTGCATTGGGTAAGAACCCTGAGAAGGAGTTTTTGAAAACTATTACTGGCAAGAAAGAGACCCTCATTGACCTTACGGTTATAGAGATCTTGTCAAGGCACACATCTGATGAGTTCTACCTTGGGGAGAGAGATGGTGGTGACTATTGGACTTCTGATGCCGGGCCATTGGAGGCCTTTAAGAGGTTTGGAAAGAAGCTTGCAGAGATAGAACAAAAGCTTGTTCAGAAGAACAACAATGAGACATTGAGAAACCGCACTGGACCGGCTAAAATGCCTTACACTGTGCTCTATCCTTCAAGTGAGGAAGGGTTGACTTTCAGAGGAATTCCCAACAGTATCTCCATCTAA 774 0.4406 MLFGCRGVAVKDPSAPYGVKLLIEDYPYASDGLEIWEAIKSWVEEYILFYYKTDEALQQDPELQAWWKELVEVGHGDLKDKPWWPKMQTREELAQVCTTLIWIASALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSAEYVALGKNPEKEFLKTITGKKETLIDLTVIEILSRHTSDEFYLGERDGGDYWTSDAGPLEAFKRFGKKLAEIEQKLVQKNNNETLRNRTGPAKMPYTVLYPSSEEGLTFRGIPNSISI 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00297 257 Pfam Lipoxygenase 6 240 IPR013819 GO:0016702|GO:0046872
Spst5g00297 257 SUPERFAMILY Lipoxigenase 6 257 IPR036226 -
Spst5g00297 257 Gene3D - 3 256 - -
Spst5g00297 257 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 1 257 IPR013819 GO:0016702|GO:0046872
Spst5g00297 257 PANTHER LIPOXYGENASE 6 257 IPR000907 GO:0016702|GO:0034440|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00297 Spst-Chr5 2580998 2581771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00297 6 257 Acyl Lipid Metabolism Gene Families AT1G55020 61.111 5.35e-111 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00297 K15718 - gmx:100803358 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00297 5 2580998 2581771 Spst4g02218 4 62908338 62913402 PCT
Spst4g02215 4 62891750 62892901 Spst5g00297 5 2580998 2581771 PCT