Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02218 ATGTCACCTCTTTTTAACAAGCCGAAGATAAAGGGCACTGTGGTGTTGATGCCCAAAAATGTGTTGGACTTCAACGCCATAACTTCCGTTGCTAGTGGTGGTGTTACTGACAATGCCAAAAATATCTTTGACACTGTCACCGACTTAGCTGGTGGAGCAATTGATAGTGTAACTTCCTTCTTAGGCCGTAATATTTCCTTGCAATTGATCAGTGCTACTCAGACTGATGCTAGTGGAAATGGAAAACTTGGAAGTGAAACCTATTTGGATAGTCATCTTCCCCCCTTACCAACGTTGGGAGCAAGACAAGATGCATTCAGTATTAACTTTGAATGGGATGCAGCTTCTGGAATTCCAGGAGCATTTTACATAAAAAACTTTAGGACTGATGAGTTTTTCCTCGTCAGTGTCACTCTTGAAGACATTCCAAACTATGGAACCTTGAACTTTGTTTGTAACTCATGGATTTATAACTTCAACAACAGTGGCAAAAAGAAACGCATTTTCTTTGTCAATGATACATATCTTCCAAGTGCAACGCCAGCTCCACTACTAAAGTACAGAAAAGAAGAATTGGAGGCTCTTAGAGGAGATGGAACAGGGAAACGCCAGGAATATGATAGAATCTATGATTATGACTTGTATAATGATTTGGGCGATCCAGATGGTGGTGATCCGCGTCCAATCCTTGGAGGATCTGTCATCTATCCTTACCCTCGTAGGGTTAGAAGTGGTAGAGAACGAACCAAAACAGATCCCAACAGTGAGAAACCAGGTCCGATTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCAGATTTCCTTATGTATGGAATAAAATCCTTATCTCAGGATGTGCTACCTTTGTTAAAATCTGCAATTTTTGAGTTAAAGGTCACATCAAGTGAGTTTAGTAACTTCGACGATGTGCGTAGTCTCTATGAGGGTGGAATTAAGCTGCCAACAGATATATTGAGCAAAATTAGTCCTTTACCAGCCCTCAAGGAAATCTTCCGCACTGATGGTGAAAATTTCCTTCAATTTCCACTGCCTCATGTTATCCAAGTTAAAAGGTCTGAATGGATGACTGATGACGAATTTGCCAGAGAAGTGATTGCTGGTGTAAATCCAAATATAATTCGTCTTCTTCAAGAATTCCCACCAAAAAGTTCCCTTGATCCCTCTCTCTATGGTGATCAAACCAGTACCATAACAAAAGAACAGTTGGAGATTAACATGGGTGGGGTCACAGTAGATGAGGCACTTGGTGCAAAGAGATTGTTCATATTAGATTACCAAGATGCATTCATTCCTTATTTGACGAGGATAAACAGCCTACCTACTTCAAAAGCTTATGCCACCAGAACAATCCTATTCTTGAAAGATGATGGCACTTTGAAGCCACTTGCTATCGAATTAAGCAAGCCACATCCAAGTGGAGATAATTTGGGTCCTGTGAGCAAAGTGGTGTTGCCTGCAATTGATGGTGTTGATAGCACAATCTGGCTATTGGCCAAGGCTCATGTAATAGTAAATGACTCTGGTTATCATCAGCTCATGAGTCATTGGTTAAATACTCATGCAGTGATGGAGCCATTTGCCATAGCAACAAACAGAAATCTCAGTGTCCTTCACCCCGTTTATAAACTTCTTTACCCTCATTATCGTGATACCATAAATATCAATGGACTTGCTAGGCAATCTTTGATCAATGCAGGTGGCATTATAGAGCAATCATTTTTGCCCGGAAAGTACTCTATGGAGATGTCTTCAGCCGTTTACAAGAATTGGGTTTTTACTGACCAAGCATTGCCAGCAGATCTCGTCAAGAGAGGATTGGCAGTTGAGGATCCATCTGCCCCCCATGGCCTTCGTCTTGTGATAGAGGACTACCCTTATGCTGTTGATGGACTAGAAATATGGGATGCTATTAAGTCATGGGTTGAAGAGTACGTTTCCTTTTATTACCCCACAGATGTGGCAGTTCAACAAGACACTGAACTCCAAGCATGGTGGAAGGAAGCCGTAGAGAAGGGTCATGCTGATCTGAAAGATAAGCCTTGGTGGCCTAAAATGCAGACTGTTGAAGATCTCATAAAATCCTGCTCTATCATCATATGGACAGCTTCTGCTCTTCATGCAGCTGTTAACTTTGGACAATATCCTTATGGAGGCTATATCCTGAACCGTCCAACTCTCAGCAGAAGGTTTATCCCAGAACCAGGGACTCCAGAATATGATGAGATGGTGACGAATTATCAAAAGGCTTATCTGAAAACAATCACACCTAAGTACGAGACCCTTATTGACCTTTCAGTGATAGAGATATTGTCAAGGCATGCTTCTGATGAGATCTACCTTGGACAGAGGGATAATCCAAACTGGACAACTGATTCAAAGGCTTTAGAAGCTTTCAAAAGGTTTGGAAGCAAACTCGCTGAAATTGAAGCGAAAATCTCTGCAAAGAACTCTGATCCAAGTCTGAGAAACCGAATTGGGCCAGTTGAGCTGCCATACACATTGCTCCATCGTTCAAGTGAGGAAGGGTTGACTTTCAAGGGAATTCCCAACAGTATCTCTATATAA 2595 0.415 MSPLFNKPKIKGTVVLMPKNVLDFNAITSVASGGVTDNAKNIFDTVTDLAGGAIDSVTSFLGRNISLQLISATQTDASGNGKLGSETYLDSHLPPLPTLGARQDAFSINFEWDAASGIPGAFYIKNFRTDEFFLVSVTLEDIPNYGTLNFVCNSWIYNFNNSGKKKRIFFVNDTYLPSATPAPLLKYRKEELEALRGDGTGKRQEYDRIYDYDLYNDLGDPDGGDPRPILGGSVIYPYPRRVRSGRERTKTDPNSEKPGPIYVPRDENFGHLKSSDFLMYGIKSLSQDVLPLLKSAIFELKVTSSEFSNFDDVRSLYEGGIKLPTDILSKISPLPALKEIFRTDGENFLQFPLPHVIQVKRSEWMTDDEFAREVIAGVNPNIIRLLQEFPPKSSLDPSLYGDQTSTITKEQLEINMGGVTVDEALGAKRLFILDYQDAFIPYLTRINSLPTSKAYATRTILFLKDDGTLKPLAIELSKPHPSGDNLGPVSKVVLPAIDGVDSTIWLLAKAHVIVNDSGYHQLMSHWLNTHAVMEPFAIATNRNLSVLHPVYKLLYPHYRDTININGLARQSLINAGGIIEQSFLPGKYSMEMSSAVYKNWVFTDQALPADLVKRGLAVEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKSWVEEYVSFYYPTDVAVQQDTELQAWWKEAVEKGHADLKDKPWWPKMQTVEDLIKSCSIIIWTASALHAAVNFGQYPYGGYILNRPTLSRRFIPEPGTPEYDEMVTNYQKAYLKTITPKYETLIDLSVIEILSRHASDEIYLGQRDNPNWTTDSKALEAFKRFGSKLAEIEAKISAKNSDPSLRNRIGPVELPYTLLHRSSEEGLTFKGIPNSISI 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02218 864 SUPERFAMILY Lipoxigenase 176 864 IPR036226 -
Spst4g02218 864 ProSiteProfiles PLAT domain profile. 42 170 IPR001024 GO:0005515
Spst4g02218 864 Pfam Lipoxygenase 184 846 IPR013819 GO:0016702|GO:0046872
Spst4g02218 864 ProSitePatterns Lipoxygenases iron-binding region signature 2. 547 557 IPR020834 GO:0016702|GO:0046872
Spst4g02218 864 Gene3D PLAT/LH2 domain 4 175 - -
Spst4g02218 864 Gene3D - 176 272 - -
Spst4g02218 864 PRINTS Plant lipoxygenase signature 140 158 IPR001246 GO:0016491
Spst4g02218 864 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Spst4g02218 864 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Spst4g02218 864 PRINTS Plant lipoxygenase signature 237 256 IPR001246 GO:0016491
Spst4g02218 864 PRINTS Plant lipoxygenase signature 777 791 IPR001246 GO:0016491
Spst4g02218 864 PRINTS Plant lipoxygenase signature 388 407 IPR001246 GO:0016491
Spst4g02218 864 PRINTS Plant lipoxygenase signature 349 365 IPR001246 GO:0016491
Spst4g02218 864 PRINTS Plant lipoxygenase signature 455 479 IPR001246 GO:0016491
Spst4g02218 864 PRINTS Plant lipoxygenase signature 304 325 IPR001246 GO:0016491
Spst4g02218 864 PRINTS Lipoxygenase signature 540 560 IPR013819 GO:0016702|GO:0046872
Spst4g02218 864 PRINTS Lipoxygenase signature 502 519 IPR013819 GO:0016702|GO:0046872
Spst4g02218 864 PRINTS Lipoxygenase signature 520 537 IPR013819 GO:0016702|GO:0046872
Spst4g02218 864 FunFam Lipoxygenase 363 497 - -
Spst4g02218 864 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 864 IPR013819 GO:0016702|GO:0046872
Spst4g02218 864 SMART LH2_4 8 172 IPR001024 GO:0005515
Spst4g02218 864 PANTHER LIPOXYGENASE 8 864 IPR000907 GO:0016702|GO:0034440|GO:0046872
Spst4g02218 864 FunFam Lipoxygenase 499 863 - -
Spst4g02218 864 Pfam PLAT/LH2 domain 73 170 IPR001024 GO:0005515
Spst4g02218 864 Gene3D - 362 497 - -
Spst4g02218 864 Gene3D - 273 361 IPR027433 -
Spst4g02218 864 MobiDBLite consensus disorder prediction 242 265 - -
Spst4g02218 864 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 175 IPR036392 GO:0005515
Spst4g02218 864 ProSitePatterns Lipoxygenases iron-binding region signature 1. 520 534 IPR020833 GO:0016702|GO:0046872
Spst4g02218 864 Gene3D - 498 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02218 Spst-Chr4 62908338 62913402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02218 9 864 Acyl Lipid Metabolism Gene Families AT1G55020 56.157 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02218 K15718 - gmx:547835 1488.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00297 5 2580998 2581771 Spst4g02218 4 62908338 62913402 PCT
Spst4g02218 4 62908338 62913402 Spst5g00296 5 2579300 2580049 PCT