Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02627 ATGGAAATTCAACCAAGCCCAAGCCCAAGCCCACAGGCCGCGGCGAGGAAGCTTTGGAACGTAGTACGCGTGGTGTTCCTCATGTTGAGAAAAGGCATAGCCAAGAGCAAACTCACCTCCGCCAAAGCAATCCTCCACCTCCACCGCCACCACAACCACCACGACGCCATTTACCCCCGCTGCGACTACGAGTTCAGCTGCAGCAACAGCCCCGCCGCCACCTTCCCCTTCCATGTCATCAAACGCAGCAAACAGCGAAGCAGGTTCCCCCACTACGACGACGTTTCTACCGTTCAGAGAGTGCTGGAGATTCTCAACAACAAGACGGAGGATTCACCTCTGAGGAAGAGTTCGAATGGGAGGAAAGTGAGAGTGACGGACTCTCCCTTCCCTATGAAGGAGGAAGAAGAGGACAACCAAGTTGACGTGGCGGCTGAGGAGTTCATCAAGAGGTTCTACAAGGACCTCAACTTGCAGCAGAAAATGGTTGCCATTGAATCACCCAACCATCATAGCTTGTGGGACAGATGA 531 0.5386 MEIQPSPSPSPQAAARKLWNVVRVVFLMLRKGIAKSKLTSAKAILHLHRHHNHHDAIYPRCDYEFSCSNSPAATFPFHVIKRSKQRSRFPHYDDVSTVQRVLEILNNKTEDSPLRKSSNGRKVRVTDSPFPMKEEEEDNQVDVAAEEFIKRFYKDLNLQQKMVAIESPNHHSLWDR 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02627 176 Pfam Cotton fibre expressed protein 138 160 IPR008480 -
Spst4g02627 176 MobiDBLite consensus disorder prediction 114 139 - -
Spst4g02627 176 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 10 167 - -
Spst4g02627 176 MobiDBLite consensus disorder prediction 109 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02627 Spst-Chr4 66243353 66243883 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02627 - - vra:106768173 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02627 4 66243353 66243883 Spst4g02323 4 63963185 63963781 ECH
Spst4g02627 4 66243353 66243883 Spst5g00211 5 1815845 1816558 ECH
Spst4g02627 4 66243353 66243883 Spst4g02627 4 66243353 66243883 ECH
Spst3g00881 3 12250311 12250910 Spst4g02627 4 66243353 66243883 PCT