Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00881 ATGGAAATTGAGGGAAGCACGCAGGTGGTGGCGAAGAAGGTATGGAACATTGTACGCGTGATGTTCTTCATGTTGAGGAAGGGCATAGCGAAGAGCAAAATAATGGTGGAGTTCCATCTCATGCTGAAGCGGGGGAAGAAGGCCTTGGTGAACAACCTCATGCTCAACCACCATTACTTCATGGCCTCTTTCACCTGCCGCTCCCAACACAACCACACCACCTTCTTCTCCCCACGCGACTACGAGTTCAGCTGCAGCAACAGCCCCGCCATCCCTTTCCACGCCGTCAAACGTGCCCACAAACACCACCGCTTCTCCAAACCCTCCCAATACGAAGACGTTTCCACCCTCTCCGCAGTTCAGAAGGTTCTTGAAATCCTCAACAACGAAACCAGCACCTCCCCCTTGCCCGGCTTCGGAAAAAGCCCTGTTGGGAAACAACTCAGAGTCACCGACTCGCCCTTCCCTCTTAAAGACGGTGGGGATAGCCAAGTCGACGTGGCAGCCGAAGAATTCATCAAGAAGTTCTACAAAGACCTCAACTTACAGAAAAAAATGGCATATATTGAGTCCCCATATCATAATTCATGGAGCAGATGA 600 0.5117 MEIEGSTQVVAKKVWNIVRVMFFMLRKGIAKSKIMVEFHLMLKRGKKALVNNLMLNHHYFMASFTCRSQHNHTTFFSPRDYEFSCSNSPAIPFHAVKRAHKHHRFSKPSQYEDVSTLSAVQKVLEILNNETSTSPLPGFGKSPVGKQLRVTDSPFPLKDGGDSQVDVAAEEFIKKFYKDLNLQKKMAYIESPYHNSWSR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00881 199 Pfam Cotton fibre expressed protein 163 196 IPR008480 -
Spst3g00881 199 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 8 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00881 Spst-Chr3 12250311 12250910 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00881 - - qsa:O6P43_007874 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00881 3 12250311 12250910 Spst4g02323 4 63963185 63963781 ECH
Spst3g00881 3 12250311 12250910 Spst5g00211 5 1815845 1816558 ECH
Spst3g00881 3 12250311 12250910 Spst3g00881 3 12250311 12250910 ECH
Spst3g00881 3 12250311 12250910 Spst4g02627 4 66243353 66243883 PCT