Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03786 ATGTCTCCCTTCTCACATTCATCTCATCAATTCATCATTTTCCTACTTATCCTGGCTTTCATAGGGGTGCGAGTTTCAGCGACAACATTCACATTCGTGAACAAGTGCGACCACACGGTGTGGCCAGGGATTCTAGGAAAACCGGACCTCGGAACAACCGGTTTCGAGCTCAAAAGAGGAAGCACGCGCACCTTCGACGCGCCACCGGGTTGGTCGGGGCGTTTCTGGGGCAGAACCGGTTGCCAGTTCGACGACTCCGGTCATGGAACCTGTGCCACCGGCGACTGCGGCTCCGGGGAGGTACTATGCAACGGCAACGGCGCCACGCCGCCGGCCACGCTCGCCGAGTTCACGCTCGGGTCCGGGTCGCCGGACTACTACGACGTGAGCCTCGTCGATGGTTACAACCTCCCCATGATGGTGGAGACCAGCGGCGGCTCCGGCTCGTGTGCCACCACCGGGTGCGGCGCGGACCTGAACCGGCGATGCCCGTCTGAGTTGAGGGTGGATGGCGGCGACGCGTGCCAGAGCGCGTGTCGCGCGTTCGGGAAACCTGAGTTTTGCTGCAGCGGCGCGTTCAATTCACCGTCGGCTTGCGCGCCTTCGATGTACTCGGAGATTTTTAAGAACGCGTGCCCAAAATCTTATAGCTACGCGTTTGATGATGCTACGAGCACTTTTACGTGCAGCGGTGCAGATTACACTGTCACATTTTGTCCCTCTTCTTCTCCAAGTTTGAAGTCTTTAATGGAATCAGGACCAGGATCATCAGTAGAACAGGCTGCAGTAGCCACTACTTCATGGATAGCCAATTTGGCCACAGGAGCCTCCACCACAACCCAACCATTTTCACCTTTCACCTCTGCATTCTTTGTTTCTGTCACTTTCATTCTTTCCTATTTTCTCTCATGGACTCTCTCTGTCCCTTTCAGAACCCCTTCTTCCTTCTTTTAA 954 0.5556 MSPFSHSSHQFIIFLLILAFIGVRVSATTFTFVNKCDHTVWPGILGKPDLGTTGFELKRGSTRTFDAPPGWSGRFWGRTGCQFDDSGHGTCATGDCGSGEVLCNGNGATPPATLAEFTLGSGSPDYYDVSLVDGYNLPMMVETSGGSGSCATTGCGADLNRRCPSELRVDGGDACQSACRAFGKPEFCCSGAFNSPSACAPSMYSEIFKNACPKSYSYAFDDATSTFTCSGADYTVTFCPSSSPSLKSLMESGPGSSVEQAAVATTSWIANLATGASTTTQPFSPFTSAFFVSVTFILSYFLSWTLSVPFRTPSSFF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03786 317 SMART tha2 30 240 IPR001938 -
Spst3g03786 317 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Spst3g03786 317 ProSiteProfiles Thaumatin family profile. 27 240 IPR001938 -
Spst3g03786 317 SUPERFAMILY Osmotin, thaumatin-like protein 28 241 IPR037176 -
Spst3g03786 317 CDD TLP-PA 29 239 - -
Spst3g03786 317 PRINTS Pathogenesis-related protein signature 29 41 IPR001938 -
Spst3g03786 317 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Spst3g03786 317 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Spst3g03786 317 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Spst3g03786 317 PRINTS Pathogenesis-related protein signature 53 62 IPR001938 -
Spst3g03786 317 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Spst3g03786 317 FunFam THAUMATIN-LIKE PROTEIN 1 28 240 - -
Spst3g03786 317 Pfam Thaumatin family 34 240 IPR001938 -
Spst3g03786 317 Gene3D Thaumatin 28 240 IPR037176 -
Spst3g03786 317 PANTHER OS03G0233200 PROTEIN 15 240 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03786 Spst-Chr3 87886994 87888269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03786 12 277 Receptor kinase-like Gene Family AT5G38280 44.803 7.11e-78 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03786 - - gmx:100808342 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03786 3 87886994 87888269 Spst3g03786 3 87886994 87888269 ECH
Spst3g03787 3 87901625 87902528 Spst3g03786 3 87886994 87888269 ECH
Spst2g02652 2 26124981 26126879 Spst3g03786 3 87886994 87888269 ECH