Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02548 ATGCAGGTTGGTTTCGGTGGTCGCGACTCAGGAGATAAAAACCCGTTCACCCCAAAGGCTTACGTGGAACGTTATTGGGACAGACATGTCAGCAGCAGCTTCCCCAAGCCATCCTTCCTTCTTTCCAAGGCTTCCCCAATGACAGCCGCCGACACCGCCTCCTTCGCTAAGCTCGCCGCCGCCAACACCCTCTCCACACGGTTGCCGGATTTTTGCTCCGCCGCGCACCTTCTCTGCTTCCCGGAGGTCCGTCCAAGCCTAGAGAAACACACCAAAGACGAGAATTTTCAAACCTACAACGACGGCCAGAACTTCACCAACTACGGAACGAGTAGCGCCGGCGGACTCGACACGTTTAAGAACTACTCCAACGATATCTTCAGCACTCCTGTCAATGATTTCCGCCGATACAGCCGTGGAGCCGCTGGCCACGAAGAAACCTTCACCGGCTACGCCAGCGACACCAACGTCGCCGACCAGAGCTTCCACACGTACGGCACCAGCACCGCCGGAGGCTCTGGTGAGTTCAAAAATTACTCCAGCAATTCAAACGTCCCCGACCTGCGATTCACCACCTACTCCGACAACACCGCTGGGAGGACGCAGTCGTTCTCCAGCTACAGTGAGGACGGTAACGCCGGCAGCCAGACATTCCAGAGTTACGGCAAGAACTCCGCTGGAGCCGCAAACGACTTCACAGCCTACGGAACAGACTCCAACGTTGCCTCCTCTGGGTTCACGAACTACGGCAAGGGAGGCGCGATTCCCAATGACACCTTCACGAACTACGGCGTTAACATGAACGTGCCCGAAGAGACCTTCAAGAGCTATGCAGACGGAACCCATGGTGGCACTGAGAGTTTTGCCAACTACAGGGACCAGTCCAACGTCGGTGACGACTCGTTCCAATCCTATGCTAAGAACACCAAAGAAGGGACCCATGTGGACTTCAAGAACTACGGCAACTCGGCGAACCCAGGTTCCGACACTTTCAAAGGCTACGCCAAAGGAGCCGAAGGGGATCACAAGGTTGGCTTCACTGGCTACGGCGTTAACACTAACGCTACCTTTAAGGATTACGCCAAAGAGGGTGTTTCCTTCGCTACTTACAACACCTCTTCCTCTCCCTCTTCTACTTCTAAAACCGTTCGCGACAGTTTAGTGAAAAGGTGGGTTGAACCCGGTAAGTTCTTTCGCGAGAGCATGCTTAAGGAAGGAACTGTCATGCCCATGCCAGATATAAGGGATAAAATGCCACAAAGGTCGTTTTTGCCCCGCTCCATTTTGGCGAAACTGCCCTTCTCTTCTTCAAAGGTTGAGGAGTTGAAGGGCGTGTTCAAGGTGTCGGATAACTCCTCCATGGACAAGATGATCATGGACTCTTTGACTGAGTGCGAGAGAGCACCCAGCGTCGGAGAGGTGAAGCGTTGTGTGGGCTCTGTCGAGGATATGATTGATTTTGCAACCTCTGTTTTGGGCCATAATGTGGCGGTTTGGACCACTGAGAATACAAATGGGTTCAATAAGAATGTGATGGTGGGTCGGGTCAAAGGGATGAACGGCGGGAAGGTGACCCAATCAGTGTCGTGCCACCAGAGCTTGTTCCCCTATCTGCTCTACTATTGTCACTCGGTTCCTAAGGTTCGGGTCTACCAAACCGATCTTTTGGACCCGGTATCCAAGGCGAAGATCAACCACGGTGTCGCTATCTGTCACTTGGACACCACTGCATGGAGCCCCACCCACGGTGCATTCTTGGCTCTTGGATCGGGTCCGGGTCAGATTGAAGTTTGCCACTGGATATTTGAGAATGACATGACTTGGACCGTTGCTGATTGA 1839 0.534 MQVGFGGRDSGDKNPFTPKAYVERYWDRHVSSSFPKPSFLLSKASPMTAADTASFAKLAAANTLSTRLPDFCSAAHLLCFPEVRPSLEKHTKDENFQTYNDGQNFTNYGTSSAGGLDTFKNYSNDIFSTPVNDFRRYSRGAAGHEETFTGYASDTNVADQSFHTYGTSTAGGSGEFKNYSSNSNVPDLRFTTYSDNTAGRTQSFSSYSEDGNAGSQTFQSYGKNSAGAANDFTAYGTDSNVASSGFTNYGKGGAIPNDTFTNYGVNMNVPEETFKSYADGTHGGTESFANYRDQSNVGDDSFQSYAKNTKEGTHVDFKNYGNSANPGSDTFKGYAKGAEGDHKVGFTGYGVNTNATFKDYAKEGVSFATYNTSSSPSSTSKTVRDSLVKRWVEPGKFFRESMLKEGTVMPMPDIRDKMPQRSFLPRSILAKLPFSSSKVEELKGVFKVSDNSSMDKMIMDSLTECERAPSVGEVKRCVGSVEDMIDFATSVLGHNVAVWTTENTNGFNKNVMVGRVKGMNGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYQTDLLDPVSKAKINHGVAICHLDTTAWSPTHGAFLALGSGPGQIEVCHWIFENDMTWTVAD 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02548 612 SMART BURP_2 395 611 IPR004873 -
Spst3g02548 612 ProSiteProfiles BURP domain profile. 397 611 IPR004873 -
Spst3g02548 612 Pfam BURP domain 397 609 IPR004873 -
Spst3g02548 612 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 9 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02548 Spst-Chr3 73641986 73643824 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02548 - - var:108321369 1118.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02548 3 73641986 73643824 Spst9g02221 9 49893892 49895939 ECH
Spst3g02548 3 73641986 73643824 Spst3g02548 3 73641986 73643824 ECH
Spst3g02550 3 73680044 73682025 Spst3g02548 3 73641986 73643824 PCT