Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01135 ATGTCAAGTCATGGCGGTTCTTCTCGAAGGAGCGGTTCGTTGTTGAACAGCCTCTCGCTGAACAAGAAGAAATCCCCTGAATATTCGCCGCTTGACCTTACCACTCGGAAATCTTTCCATTCACCGCGGACCGTGGGAGAGCGAACTGTGAAATCATTGCGACTTTCAAAGGCATTGACAGTTCCTGAAACAACAACTGTCTATGAAGCTTGCCGTAGGATGGCTACTCGCAAAGTAGATGCTCTATTACTAACTGATTCTAATGCTTTGCTCTGTGGGATCCTCACAGACAAGGTTACAACAACAACTGATTCTATCATTGGATTTCTCTTTGCAACACTCATTAACAAGAAAGAAGAAAAAGATTTAAGGAGGTTCAGACATTTACCTGTGGTGGAGAATGGAGAAGTCGTTGCCATCCTTGACATTGCAAAGTGTTTGAATGATGCCATTGCCCGTATGGAGAGGGCAGCTGAGAAAGGAAAGGCAATTGCGGCTGCCGTTGAAGGTATCGAAAAACACTGGGGAACACCTAAATCTGGCACCAATTCCACATTCTTTGAGACTCTTCGCGAGCAGATATTTAAGCCATCTTTGTCTACAATCATTCCTGATAATTCAAAGGTTGTTACAGTTTCACCAACAGACTCAGTTTTGACGACAACAAAGAAGATGCTTGAACTTCGTGTAAATTCTGCAGTTGTGACGGTTGATGACAAACTTTGTGGTATCCTTACTTCAAAGGATATCCTGATGCGGGTGATAGCGCAAAATCTTCCGCCAGCGTTAACTCTAGTTGAGAAGGTAATGACTCCAAATCCAGAATGTGCAACAATTGATTCACCAATAGTCGATGCACTTCACACTATGCATGATGGAAAATTTTTGCATCTTCCCGTGGTTGACAGAGATGGCATTGTTGTTGCTACGCTTGATGTAATTCATATAACTCACGCGGCTGTGGCGACAGCTAGTCAGGTCGGAAATACTACCAGTTTTAACAATGAAGCAGCCAACTCCATGATACAAAAGTTTTGGGATTCGGCCATGTCCTTAGCTCCAAATGGGGAGGATGATGATTCCCAAAGCGAAACTTCCTTGAAAATGATTTCTGAGGGAGGAGAAACAGGGAGATCCGTTTCTTATCTTGGGTCAAGCATACAGAACACATTTTCCTTCAAAGTACAAGACAGGAAGGGCAGGTTGCATAGGTTCACAAGCGATACTCGGAGCTTGGCAGAGGTTATAACTTCCATCATTCAGAGAGTCGGTGATGAAATTGACCCCACGAACCTCCCACAAATTTTGTACGAAGATGAAGAAAATGACAAAGTTGTACTGAATTCGGACAGTGATCTTACCACAGCTATAGACCACGCCAAGACGGCTGGTTTGAAGGGATTGAGATTGCATTTAGACTACACAGGAACACGTGGTTATGGAAGTGATTCAAGTTCAGTAAGTTTGAAATATGGTAATTCAGAATCATGGGCAACAGCATACACCACCGTTGCCGCTGGAGCTGCAATTGTTGCTGCCTTAGGCCTATTAGCGTTTGTGAGGAGAAGTAAACAGTAG 1578 0.4373 MSSHGGSSRRSGSLLNSLSLNKKKSPEYSPLDLTTRKSFHSPRTVGERTVKSLRLSKALTVPETTTVYEACRRMATRKVDALLLTDSNALLCGILTDKVTTTTDSIIGFLFATLINKKEEKDLRRFRHLPVVENGEVVAILDIAKCLNDAIARMERAAEKGKAIAAAVEGIEKHWGTPKSGTNSTFFETLREQIFKPSLSTIIPDNSKVVTVSPTDSVLTTTKKMLELRVNSAVVTVDDKLCGILTSKDILMRVIAQNLPPALTLVEKVMTPNPECATIDSPIVDALHTMHDGKFLHLPVVDRDGIVVATLDVIHITHAAVATASQVGNTTSFNNEAANSMIQKFWDSAMSLAPNGEDDDSQSETSLKMISEGGETGRSVSYLGSSIQNTFSFKVQDRKGRLHRFTSDTRSLAEVITSIIQRVGDEIDPTNLPQILYEDEENDKVVLNSDSDLTTAIDHAKTAGLKGLRLHLDYTGTRGYGSDSSSVSLKYGNSESWATAYTTVAAGAAIVAALGLLAFVRRSKQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01135 525 Gene3D - 196 338 IPR046342 -
Spst3g01135 525 CDD PB1_MUG70 391 475 - -
Spst3g01135 525 Pfam CBS domain 266 314 IPR000644 -
Spst3g01135 525 Pfam CBS domain 206 252 IPR000644 -
Spst3g01135 525 Pfam CBS domain 56 97 IPR000644 -
Spst3g01135 525 SMART cbs_1 273 321 IPR000644 -
Spst3g01135 525 SMART cbs_1 57 104 IPR000644 -
Spst3g01135 525 SMART cbs_1 208 255 IPR000644 -
Spst3g01135 525 Gene3D - 40 102 IPR046342 -
Spst3g01135 525 MobiDBLite consensus disorder prediction 1 24 - -
Spst3g01135 525 Pfam PB1 domain 390 473 IPR000270 GO:0005515
Spst3g01135 525 SUPERFAMILY CBS-domain pair 207 319 IPR046342 -
Spst3g01135 525 ProSiteProfiles CBS domain profile. 270 327 IPR000644 -
Spst3g01135 525 MobiDBLite consensus disorder prediction 1 45 - -
Spst3g01135 525 ProSiteProfiles PB1 domain profile. 388 475 IPR000270 GO:0005515
Spst3g01135 525 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 37 98 - -
Spst3g01135 525 SUPERFAMILY CAD & PB1 domains 381 472 - -
Spst3g01135 525 ProSiteProfiles CBS domain profile. 202 261 IPR000644 -
Spst3g01135 525 CDD CBS_pair_MUG70_2 206 322 - -
Spst3g01135 525 SMART PB1_new 390 475 IPR000270 GO:0005515
Spst3g01135 525 SUPERFAMILY CBS-domain pair 49 147 IPR046342 -
Spst3g01135 525 Gene3D - 387 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01135 Spst-Chr3 14673534 14679623 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01135 - - gmx:100783514 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01135 3 14673534 14679623 Spst3g01135 3 14673534 14679623 ECH
Spst3g01135 3 14673534 14679623 Spst9g01922 9 27354826 27360082 PCT
Spst9g02138 9 45869478 45874218 Spst3g01135 3 14673534 14679623 PCT