Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03447 ATGATGGGGTCAGAGAGAGAGTGTGAGATTTCTCTACCTGTTATTGATTTCAGTAATGAAGACCTGAAACCTGGAACTCAAACATGGGTTTCCACTTGTGATGTTGTGAGGGGTGCCTTAGAGCATCACGGTGGATTCCTGGCACACTACAATATTGATCCACTGCTCCATGACTCTATCTTCTCTGCAATGGAACAACTCTTGGCCCTTCCATTAGAAACAAAAATGCAACACACCACTGATAAACCTATCTACAGCTATGCAGGACAACGCCCTGATATTCCTTTGTATGAATCCATGGCCATCGATAACCCATTAAATGCTAAAGACTGTCACAAGTACACAACCACCATGTGGCCACAAGGGAATGACCAATTCAGTGAAAGTGTGAATTCCTATGCAAAGAAAGTGGCAGAACTGGATTATATGGTTAAGAGAATGGTGTTTGGGAGCTATGGATTGGAGAATCAGAAATGTGAGTCTCTGATTGAATCAACTGATTATATTCTGAGATGCTACAAATATAGAACACCGAAGGTTGGTGAAACCAACTTAGGAGTGCGTCCTCATACAGATTCAGGGTTCCTTACTATATTGAATCAGAGGTTAACTGGCTTAGAGATTCAGTTGGAGAATGGAGAGTGGATCCAGGTTGATGCCTCACCCTCCATGTTTGCAGTATTGGCCGGTGATGCATTTATGGTATGGAGTAATGACAGGATTCGCAGTTGTGTACACAGAGTATTGATGAATTCAAAGGTAGAGAGATACAGTTTGGGGCTGCTTTCATATGCTGGAAAGGTGATGGAAGCAGAGGAAAAATTAGTGGATGAGGAACACCCTCTTCGTTATAAACCATTTGACCATTATGGATATCTTCGTTTCTTCCTCACAGAAGAAGCTGTTAAAGCTGCTTCTAGGATCAAGGCATATTGTGGCATTTGA 945 0.4222 MMGSERECEISLPVIDFSNEDLKPGTQTWVSTCDVVRGALEHHGGFLAHYNIDPLLHDSIFSAMEQLLALPLETKMQHTTDKPIYSYAGQRPDIPLYESMAIDNPLNAKDCHKYTTTMWPQGNDQFSESVNSYAKKVAELDYMVKRMVFGSYGLENQKCESLIESTDYILRCYKYRTPKVGETNLGVRPHTDSGFLTILNQRLTGLEIQLENGEWIQVDASPSMFAVLAGDAFMVWSNDRIRSCVHRVLMNSKVERYSLGLLSYAGKVMEAEEKLVDEEHPLRYKPFDHYGYLRFFLTEEAVKAASRIKAYCGI 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03447 314 FunFam Probable 2-oxoglutarate-dependent dioxygenase AOP1.2 4 301 - -
Spst1g03447 314 SUPERFAMILY Clavaminate synthase-like 10 299 - -
Spst1g03447 314 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 292 - -
Spst1g03447 314 Gene3D - 10 312 IPR027443 -
Spst1g03447 314 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 165 270 IPR005123 -
Spst1g03447 314 Pfam 2OG-Fe(II) oxygenase superfamily 178 259 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03447 Spst-Chr1 43241104 43243210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03447 133 285 Glycosyltransferase AT5G59530 28.125 3.05e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03447 - - gmx:100817683 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03447 1 43241104 43243210 Spst7g00370 7 2916126 2917228 PCT
Spst7g00371 7 2918844 2920017 Spst1g03447 1 43241104 43243210 PCT