Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03249 ATGAAAGATGTCGAAGAAGGCGTGCAGAAAGGAATCCTAGAGCCACTGGTGGGGGAACAGGACCACCAGTTGGTCCGTGCAAGCAAAGGGCATCCATGGATGGTTTATTTTTGTACATTCGTTGCAGTGTGTGGTTCTTATGAATTTGGTGCTTGTGCTGGATATTCATCTCCCACTCAAGATGCTATCAAGAAGGATTTCAGTCTGTCTTTGGCAGAGTACTCCCTGTTTGGTTCAATCTTGACTTTTGGTGCGATGGTTGGCGCAATAACAAGTGGGTCTATTGCTGATTTTATTGGACGAAAAGGGGCAATGAGAGTGTCAAGTGCTTTCTGTGTCGCGGGGTGGCTTCTTATTTACTTTTCTGAGGGTACAGTGCCTTTGGACATTGGGAGGCTAGCAACAGGATATGGAATGGGAGTTTTTTCATATGTGGTTCCTATCTTTATAGCAGAAATAGCACCAAAAGAACTTCGAGGGACACTGACTACCTTAAATCAGTTTATGATCACTGCAGCTGTGTCAGTGGCATTCACCATTGGAAATGTACTTTCGTGGAGGGATTTAGCACTAACTGGCCTGATTCCCACTTCTATATTGCTATTGGGTCTGTTTTTCATTCCAGAGTCTCCTAGATGGCTAGCAAAGAGAGGACGTCAAAAAGATTTTGAAGCAGCACTGCAAATACTTCGTGGCAAAGATGCTGACATATCTGAGGAGGCAGAGGAAATTCAGGATTACATAACTACCTTGGAGCAGCTCCCAAAGTCTAGGCTACTGGAATTGTTTCATAGAAGATATTTGCGCTCAGTCACTATAGGAATAGGCCTTATGGTCTGCCAGCAGTTTGGAGGAATCAATGGTATTTGCTTTTATACCAGCAGTATTTTTGCACTAGCAGGATTTTCTCCCACCATCGGTACTATAGCATATGCTTGCCTTCAGATCGTTATCACGGGTCTTGGAGCTGCCTTAATAGATAAAGCTGGGAGGAAGCCCCTACTGCTTTTATCCGGATCGGGATTGGTCGCAGGATGTACATTTGCAGCAGTTGCTTTCTATCTCAAGGTTCACGAAGTAGCTGTTGCAGCTGTCCCAGCACTTGCAGTAACAGGCATAATGGTCTACATAGGATCATTTTCAATAGGAATGGGAGCTATTCCATGGGTTGTGATGTCCGAGATTTTTCCAGTCAATATTAAAGGGCTAGCTGGAAGTGTGGCCACATTAACCAACTGGTTTGGTGCATGGTTATGTTCCTATACTTTCAACTTTCTCATGAGCTGGAGTTCCTATGGTACCTTCATTCTTTATGCAGCAATTAATGTATTGGCTATATTATTTATCATTGTTGCGGTGCCAGAAACCAAGGGGAAAAGCTTGGAACAATTACAAGCAGCCATTAACTCATAG 1413 0.4374 MKDVEEGVQKGILEPLVGEQDHQLVRASKGHPWMVYFCTFVAVCGSYEFGACAGYSSPTQDAIKKDFSLSLAEYSLFGSILTFGAMVGAITSGSIADFIGRKGAMRVSSAFCVAGWLLIYFSEGTVPLDIGRLATGYGMGVFSYVVPIFIAEIAPKELRGTLTTLNQFMITAAVSVAFTIGNVLSWRDLALTGLIPTSILLLGLFFIPESPRWLAKRGRQKDFEAALQILRGKDADISEEAEEIQDYITTLEQLPKSRLLELFHRRYLRSVTIGIGLMVCQQFGGINGICFYTSSIFALAGFSPTIGTIAYACLQIVITGLGAALIDKAGRKPLLLLSGSGLVAGCTFAAVAFYLKVHEVAVAAVPALAVTGIMVYIGSFSIGMGAIPWVVMSEIFPVNIKGLAGSVATLTNWFGAWLCSYTFNFLMSWSSYGTFILYAAINVLAILFIIVAVPETKGKSLEQLQAAINS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03249 470 ProSitePatterns Sugar transport proteins signature 1. 322 339 IPR005829 GO:0016020|GO:0022857|GO:0055085
Spst1g03249 470 Pfam Sugar (and other) transporter 46 466 IPR005828 GO:0016020|GO:0022857|GO:0055085
Spst1g03249 470 SUPERFAMILY MFS general substrate transporter 32 464 IPR036259 -
Spst1g03249 470 FunFam sugar transporter ERD6-like 6 29 468 - -
Spst1g03249 470 NCBIfam sugar porter family MFS transporter 31 463 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst1g03249 470 Gene3D MFS general substrate transporter like domains 28 470 IPR036259 -
Spst1g03249 470 ProSiteProfiles Major facilitator superfamily (MFS) profile. 34 457 IPR020846 GO:0022857
Spst1g03249 470 CDD MFS_GLUT6_8_Class3_like 36 463 IPR044775 GO:0008643|GO:0051119
Spst1g03249 470 PANTHER - 29 465 - -
Spst1g03249 470 PRINTS Sugar transporter signature 281 291 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst1g03249 470 PRINTS Sugar transporter signature 370 391 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst1g03249 470 PRINTS Sugar transporter signature 129 148 IPR003663 GO:0016020|GO:0022857|GO:0055085
Spst1g03249 470 PRINTS Sugar transporter signature 393 405 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03249 Spst-Chr1 40962989 40967148 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03249 1 469 Organic Solute Cotransporters AT5G18840 57.806 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03249 K03444 - gmx:100819822 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03249 1 40962989 40967148 Spst6g00386 6 3659992 3664385 ECH
Spst1g03249 1 40962989 40967148 Spst1g03249 1 40962989 40967148 ECH
Spst1g03249 1 40962989 40967148 Spst6g00381 6 3635969 3639701 ECH