Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02613 ATGCAGCTGGCTACTACAATGGACAAGCAGAAGGGGACGAGTATTGCTTTTGAGACATTCACGTGGAAAATTGAAAAGTTCTCTAAACAGAACACCAAGAAACTACGATCCAAGACCTTCCAAATCCGAGGTTATAAATGGTACTGTCAAATGGATTCGAAGTCTAGAGTTTGGCGAATTCGTTTGTATCCATTATTGAAAAATGTTGATCATTTTTCATTGTATTTGATGGTTGCGGATTCTTTACCACCGTATGGATGGAGCAGAAATACGTATTTCAAGTTGTCTCTGATTAATCAATTGGATGGCAATAAGTCAGTTACAAATGAGACTCAGCAAAAGTTCAATGGTGGATATCGTAGCTGGGGCTCATTTTTCGTGAAACTAAGTGACTTCTATGATTGGAGTCAAGGCTATCTTGTGAACAACACATGCATCATTGAAGCTCATATTTGTGTCTCCGATCATGGCATCTTAGAAGCTCACAATTTGAACAAAATCACACCAAGTAACAACTCTGAGTTAGGTGATCAAGGAACAAGAAATTCAGAATCCACACAACAGGAAGATGATAAGGAAACAGAAACATCAGATGACAGTGAGACACTTAGTTCAACAACCTGTGGGTCTAGTCAAACAGAAGGAGAAGTTCAAAGTTCAGATTTGACGCTAAAAGACCTTCTAGATTTGGGGAGTTTAGGGAAAGAAGAAGCAGCTTTTGTTCCACTATTGGAAGAGGCATGCATATGGCATCCTTCACTGATAAGGAGCCAGAGGAAAAGTTCTAGATGGTTCAAACTATGGGCATTCACATCTTTAGGTCAAGTTCTACATTTACTTAAGACAAATAAGGTGAAGGATATGAATGAAGATGCATGTAATCGCCTTCATGGCTTATGGGAGGAACTTGTTAAGCATTCAGGATTTCAATTGTCTTGGTTGGAGCCTTATGTCCAATCTGCATTGGGTATGAAAGTTCATTTGGAGAAAACAGAAGAGGTGAATAAACTGAAAGACAACGTTGTTACTTTGGAGATTAAAACGAAGAAGTTGAGGGGAGAATTGGCAGCTGCAGAAGCTGAGTTTGAGATAACAAGGAGGGCCTTGGCTGAGGCCAAAAAAGGTTTCATAGAGTTGGATTTGAATGCTGAATTAGGTTATGCTATGTTTTAG 1173 0.393 MQLATTMDKQKGTSIAFETFTWKIEKFSKQNTKKLRSKTFQIRGYKWYCQMDSKSRVWRIRLYPLLKNVDHFSLYLMVADSLPPYGWSRNTYFKLSLINQLDGNKSVTNETQQKFNGGYRSWGSFFVKLSDFYDWSQGYLVNNTCIIEAHICVSDHGILEAHNLNKITPSNNSELGDQGTRNSESTQQEDDKETETSDDSETLSSTTCGSSQTEGEVQSSDLTLKDLLDLGSLGKEEAAFVPLLEEACIWHPSLIRSQRKSSRWFKLWAFTSLGQVLHLLKTNKVKDMNEDACNRLHGLWEELVKHSGFQLSWLEPYVQSALGMKVHLEKTEEVNKLKDNVVTLEIKTKKLRGELAAAEAEFEITRRALAEAKKGFIELDLNAELGYAMF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02613 390 MobiDBLite consensus disorder prediction 169 218 - -
Spst1g02613 390 CDD MATH 19 151 IPR002083 GO:0005515
Spst1g02613 390 Coils Coil 334 375 - -
Spst1g02613 390 ProSiteProfiles MATH/TRAF domain profile. 17 151 IPR002083 GO:0005515
Spst1g02613 390 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 17 362 - -
Spst1g02613 390 MobiDBLite consensus disorder prediction 169 183 - -
Spst1g02613 390 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 4 159 IPR008974 GO:0005515
Spst1g02613 390 MobiDBLite consensus disorder prediction 200 218 - -
Spst1g02613 390 SUPERFAMILY TRAF domain-like 19 153 - -
Spst1g02613 390 Pfam MATH domain 25 151 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02613 Spst-Chr1 34620507 34621904 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02613 - - gmx:102664376 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02613 1 34620507 34621904 Spst1g02613 1 34620507 34621904 ECH
Spst1g02613 1 34620507 34621904 Spst8g00628 8 5872675 5887627 ECH
Spst7g00208 7 1519384 1520641 Spst1g02613 1 34620507 34621904 PCT