Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00628 ATGACTGTGATGACTCCTGCTCCCATTGACGTACGGTTTTTTACCCTTACTCTGCAACTCACCGAGCTCCCTTACGCGGCTTCAATCACTCGCAGTGTTTCAATTTCGCTTCCTCAGCAGGAGGATGAGGAGATGCTTGTCCCACATACTGATTTGGTGGAGAATAATCACCAACCCATGGAAGTTGTGGCACAATCTGATGCTGCCAACACTGTGGAGAGCCAGCCTGTAGAGGATCCTTCGTCAACAAGATTCACATGGAAAATTGACAACTTTTCTAGGATGAATTCAAAGAAGCTCTATTCAGATATATTTGTTGTTGGTGGTTATAAATGGCGTGTACTTATTTTCCCAAAAGGGAATAATGTGGACTATTTGTCCATGTATTTGGATGTTGCAGATTCATCCAGTTTGCCCTATGGTTGGAGTAGATACGCACAGTTTAGCTTGGCCGTTGTTAATCAAATCCATAATAAATATTCTGTGAGAAAAGACACGCAGCACCAATTCAATGCGCGAGAAAGTGATTGGGGTTTCACGTCCTTTATGCCACTCGGTGAATTGTATGATCCTAGTAGAGGGTATCTTGTGAATGACACTCTTATAGTTGAAGCCGAGGTTCTTGTTCGTAGAATTGTTGATTACTGGACTTATGATTCAAAAAAGGAGACTGGCTATGTTGGTCTTAAGAACCAGGGTGCTACATGTTATATGAATTCTCTGCTCCAAACTTTGTATCACATTCCTTATTTTCGAAAGGCTGTGTACCATATGCCAACAACAGAGAATGACATGCCCTCTGCAAGCATCCCTTTGGCTTTGCAAAGTTTATTCTACAAGCTCCAGTATAGTGACACCAGTGTTGCAACAAAGGAGCTCACTAAATCTTTTGGATGGGATACATATGATTCTTTCATGCAGCATGATGTTCAAGAACTGAACAGAGTCCTTTCTGAAAAACTTGAAGACAAAATGAAGGGAACTGTTGTTGAGGGAACTATACAGAAATTATTTGAAGGGCATCATATGAACTATATTGAGTGCATCAATGTGGACTATAAATCAACTCGAAAGGAGTCATTTTATGACCTTCAGCTTGATGTGAAAGGCTGTCCTGATGTTTATGCTTCCTTTGACAAGTATGTTGAAGTTGAAAGTCTTGAAGGGGACAACAAATATCATGCCGAACAATATGGTTTGCAGGATGCTAAGAAGGGTGTCCTATTCATTGATTTTCCTCCTGTTCTTCAGCTTCAGCTAAAAAGATTTGAATATGACTTTATGCGGGACACTATGGTAAAGATTAACGACCGTTATGAGTTTCCCATGCAACTTGACCTTGACCGTGAGAATGGGAAATATTTATCACCCGAGGCTGATAGGAATGTCCGCAATCTTTACACACTTCACAGTGTTTTGGTTCACAGCGGTGGTGTACATGGGGGACATTATTACGCTTTTATCAGGCCAACTCTCTCTGAGCAGTGGTATAAATTTGACGATGAGAGGGTTACTAAAGAAGACACTAAACGGGCATTGGAGGAGCAATATGGTGGTGAGGAAGAGTTACCACAAACAAATCCTGGGTTTAACAACACTCCTTTTAAGTTCACCAAATATTCAAATGCTTACATGCTGGTGTATATTCGTGAAGCTGACAAGGACAAAGTAATATGCAACGTGGATGAGAAAGACATTGCTGAACATTTAAGGGAGAGGTTGAAGAAAGAACAAGAAGAAAAGGAGCACAAGAAAAAAGAAAAGGCAGAGGCTCACCTTTACACTATTATAAAGGTTGCACGAGATGAAAACCTTGCAGAGCAGATTGGAAAGGATATATATTTTGATCTTGTAGACCATGACAAAGTGAGGAGTTTCCGTGTTCAAAAACAGACATCTTTTAATGCTTTTAAGGAAGAGGTTGCTAAAGAGTTTGACATACCAGTTCAATTCCAGCGCTTCTGGCTATGGGCAAAGCGGCAAAACCATACATATCGTCCAAATCGACCGTTGACACCTATGGAAGAAGCACAATCTGTTGGACAATTGAGAGAGGTATCAAACAAGGTTCACAATGCAGAATTGAAATTGTTTTTGGAAGTGGAGCTCGGGCTGGATTTACGCCCCATAGCACCACCTGACAAGACAAAGGATGATATATTACTTTTCTTCAAGTTATATGATCCTGAGAAAGAGGAGCTACGTTATGTTGGGAGGCTGTTTGTGAAGAATACTGGTAAGCCATCAGAAATCTTGACGAAGTTAAATAAAATGGCTGGTTATGACCCTGATGAAGAGATTGGACTATATGAGGAAATTAAGTTTGAGCCAAATGTTATGTGTGAACCTATTGAAAAGAAAGTAACATTTCGAGCTAGCCAGTTAGAAGATGGAGATATTATATGCTTTCAGAAATCTCCTGCTATATACAATGAAGAACGTATCCGCTATCCAGATGTGCCATCATACCTAGAATATGTGCACAACCGCCAGGTTGTTCACTTTCGATCTCTTGATAAACCCAAGGAGGATGACTTCTGCTTGGAGATGTCAAGACTCTATACATATGATGATGTGGTGGAGAAAGTGGCTCAACAACTTGGTTTGGATGATCCATCCATAATTAGGCTCACGCCTCACAATTGTTACTCTCAGCAGCCAAAACCCCAGCCTGTTAAGTATCGTGGTGTGGAGCATTTGTCTGAAATGCTGGTTCACTACAATCAGACTTCGGACATATTGTACTATGAAGTACTTGACATCCCTCTGCCAGAATTGCAAGGTTTGAAAACTCTGAAAGTTGCATTTCACCATGCCACCAAGGATGAAGTGGGGGTTATTCATACCATTAGACTCCCAAAACAGAGTACTGTGGGTGATGTCCTTGATGATCTGAAAACAAAGGTGGAATTGTCCAACCCTGAAGCTGAGCTTAGGTTGCTTGAAGTTTTCTATCACAAGATATACAAGGTTTTCCCTCCCAGTGAGAAGATTGAAAACATTAATGATCAATACTGGACATTACGAGCAGAGGAGATTCCAGAAGAAGAGAAGAATCTGGGTCCTCATGATCGTCTAATTCATGTGTATCATTTCACCAAAGACACGGCTCAGAACCAAATGCAAATTCAGAACTTTGGGGAACCATTTTTCTTGGTCATTCATGAAGGGGAGACTTTGACTGAAATTAAAGTACGAATACAGAAGAAACTTCAAGTTCCTGATGATGAGTTTGTCAAGTGGAAATTTGCCTTTTTTTCTTTAGGGCGTCCTGAGTACCTTCAGGATTCTGACATCGTATCCAGTCGTTTTCAGAGGAGAGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATACTGATAATGCTCCTAAGAGATCATATGCTGTTAACCAGAATCGCCATACTTTTGAGAAGCCAGGGAAAGAGCGAAAGGCTACTCTGTATAGGCCAACTAGTGAGATCAGCAATCCAGGTGGTTTCTGCAGTCCGTTGAGCTTTACTACTTCCCACTTTGTGTGGAAGTTCTTCAAGTTGAGGTCATTGATCATCATCACTGCACTGTATCAGTACATAAGATTTTTGGATTACAGAGCTCATGCTCCAAGCAGACGTGTCCAAGTGACAGATGGCAACACCACAGTTCACCTTGCCCTTGCTTTTCTGGTCCAACAAGTCCGCTTCTTAGACCCGAACCTCTCCCACGACTCATCCCATTCACCTTCGACCCTTCACATTCACTATGCGTTTCGAACCACAACGTTGGAACCCAACATCCCTGTCACGAAGTCCACCATATCGTGGATGGACCCCACTCACCTCTTCGTCTCACCTTGGCTCGTTGGTCTCTCGCACTCGGTCGCCGAATCCATGACAATCTTCTCCAATCAGGAACCAACACCAACATCAAAAGCCCGGTTCACCCCATTAACGGTAAACGGTAACTTAGACAAAATTACCGGGGGCAAAAGCGACCTTTTAGGCATTTTATCTCTAATATCCGGCATCGCCATCACCGTTCCTTCCTTGGGCAGAGACTCCCGAAAAAACTTACCCACTGTTGTTTATAGGAACAAGTATCATCATGGTCAATTGTCATGTGTGATATATGGTCAACTTGGAAATTCTAGTCATCTTTGTCCGATAGGTAAAAATCACATACGATTTTGTCCTTACCAACGTTTAACCGGGTTAAGCGAAGAGGGAGCCGTAGTTTTAAAACGAGTTTTGCTTCTCGTTGCCGCGTTTTCCGTAACGCGCGAACGATTGTTCGCGGCTATTACCGTTCTCGGTGTATCCTGCGAAGGATTGGATTCGTTTCCTGTCGTCGTCGGGGTAGGAGAGGAATTCGAGGTCGTCGAAGCCGTTGACGATTCGGCGTAG 4389 0.424 MTVMTPAPIDVRFFTLTLQLTELPYAASITRSVSISLPQQEDEEMLVPHTDLVENNHQPMEVVAQSDAANTVESQPVEDPSSTRFTWKIDNFSRMNSKKLYSDIFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSSSLPYGWSRYAQFSLAVVNQIHNKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLVNDTLIVEAEVLVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSASIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCPDVYASFDKYVEVESLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPMQLDLDRENGKYLSPEADRNVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDTKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIREADKDKVICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDENLAEQIGKDIYFDLVDHDKVRSFRVQKQTSFNAFKEEVAKEFDIPVQFQRFWLWAKRQNHTYRPNRPLTPMEEAQSVGQLREVSNKVHNAELKLFLEVELGLDLRPIAPPDKTKDDILLFFKLYDPEKEELRYVGRLFVKNTGKPSEILTKLNKMAGYDPDEEIGLYEEIKFEPNVMCEPIEKKVTFRASQLEDGDIICFQKSPAIYNEERIRYPDVPSYLEYVHNRQVVHFRSLDKPKEDDFCLEMSRLYTYDDVVEKVAQQLGLDDPSIIRLTPHNCYSQQPKPQPVKYRGVEHLSEMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVGVIHTIRLPKQSTVGDVLDDLKTKVELSNPEAELRLLEVFYHKIYKVFPPSEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKDTAQNQMQIQNFGEPFFLVIHEGETLTEIKVRIQKKLQVPDDEFVKWKFAFFSLGRPEYLQDSDIVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSYAVNQNRHTFEKPGKERKATLYRPTSEISNPGGFCSPLSFTTSHFVWKFFKLRSLIIITALYQYIRFLDYRAHAPSRRVQVTDGNTTVHLALAFLVQQVRFLDPNLSHDSSHSPSTLHIHYAFRTTTLEPNIPVTKSTISWMDPTHLFVSPWLVGLSHSVAESMTIFSNQEPTPTSKARFTPLTVNGNLDKITGGKSDLLGILSLISGIAITVPSLGRDSRKNLPTVVYRNKYHHGQLSCVIYGQLGNSSHLCPIGKNHIRFCPYQRLTGLSEEGAVVLKRVLLLVAAFSVTRERLFAAITVLGVSCEGLDSFPVVVGVGEEFEVVEAVDDSA 1462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00628 1462 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 72 553 - -
Spst8g00628 1462 FunFam Ubiquitin carboxyl-terminal hydrolase 13 830 927 - -
Spst8g00628 1462 Gene3D - 830 927 - -
Spst8g00628 1462 ProSiteProfiles MATH/TRAF domain profile. 82 207 IPR002083 GO:0005515
Spst8g00628 1462 FunFam Ubiquitin carboxyl-terminal hydrolase 13 224 552 - -
Spst8g00628 1462 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 228 243 IPR018200 GO:0004843|GO:0006511
Spst8g00628 1462 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 80 223 IPR008974 GO:0005515
Spst8g00628 1462 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 467 484 IPR018200 GO:0004843|GO:0006511
Spst8g00628 1462 Pfam Ubiquitin carboxyl-terminal hydrolase 227 548 IPR001394 GO:0004843|GO:0016579
Spst8g00628 1462 Pfam MATH domain 89 208 IPR002083 GO:0005515
Spst8g00628 1462 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 652 904 IPR024729 -
Spst8g00628 1462 Gene3D - 712 829 - -
Spst8g00628 1462 Coils Coil 560 591 - -
Spst8g00628 1462 FunFam Ubiquitin carboxyl-terminal hydrolase 13 80 223 - -
Spst8g00628 1462 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 227 551 IPR028889 -
Spst8g00628 1462 Pfam Ubiquitin-specific protease C-terminal 914 1125 IPR029346 -
Spst8g00628 1462 SMART math_3 84 188 IPR002083 GO:0005515
Spst8g00628 1462 Gene3D Cysteine proteinases 224 552 - -
Spst8g00628 1462 FunFam Ubiquitin carboxyl-terminal hydrolase 13 712 829 - -
Spst8g00628 1462 SUPERFAMILY Cysteine proteinases 222 579 IPR038765 -
Spst8g00628 1462 CDD MATH 84 207 IPR002083 GO:0005515
Spst8g00628 1462 CDD peptidase_C19C 225 551 - -
Spst8g00628 1462 SUPERFAMILY TRAF domain-like 81 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00628 Spst-Chr8 5872675 5887627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00628 213 516 Miscellaneous Gene Families AT4G31670 24.924 2.10e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00628 K11838 - gmx:100778442 2140.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00628 8 5872675 5887627 Spst8g00628 8 5872675 5887627 ECH
Spst1g02613 1 34620507 34621904 Spst8g00628 8 5872675 5887627 ECH
Spst7g00206 7 1507894 1510900 Spst8g00628 8 5872675 5887627 ECH