Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02452 ATGGGGCTCTCATTCACGAAGCTTTTCAGTCGGCTGTTTGCGAAGAAGGAGATGCGTATACTTATGGTCGGTCTCGACGCCGCCGGTAAGACCACCATTCTCTACAAACTCAAGCTCGGAGAGATCGTGACCACCATTCCCACCATTGGGTTTAATGTGGAAACTGTGGAATATAAGAACATCAGCTTCACTGTCTGGGATGTTGGTGGCCAGGACAAGATCCGTCCTTTGTGGAGACATTACTTTCAAAATACCCAAGGACTTATATTTGTGGTTGATAGCAATGACCGAGATCGTGTGGTGGAAGCCAGAGACGAGCTCCACAGGATGTTGAATGAGGATGAGTTGAGAGATGCTGTGCTTCTTGTTTTTGCAAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCTGAAATAACTGATAAGCTTGGTCTTCACTCTCTCCGTCAGCGTCACTGGTATATCCAGAGCACATGTGCCACATCTGGTGAAGGACTTTACGAAGGACTTGACTGGCTTTCGAACAACATTGCAAACAAGGTTAATGCAGAATAA 555 0.4595 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVNAE 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02452 184 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Spst1g02452 184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 179 IPR027417 -
Spst1g02452 184 Gene3D - 4 184 IPR027417 -
Spst1g02452 184 FunFam ADP-ribosylation factor 1 1 181 - -
Spst1g02452 184 PANTHER ADP RIBOSYLATION FACTOR-RELATED 7 176 IPR024156 GO:0005525
Spst1g02452 184 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Spst1g02452 184 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Spst1g02452 184 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Spst1g02452 184 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Spst1g02452 184 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Spst1g02452 184 NCBIfam small GTP-binding protein domain 16 157 IPR005225 GO:0005525
Spst1g02452 184 SMART rab_sub_5 18 184 - -
Spst1g02452 184 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Spst1g02452 184 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Spst1g02452 184 SMART arf_sub_2 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02452 Spst-Chr1 33221061 33222775 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02452 K07937 - cave:132180115 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02452 1 33221061 33222775 Spst1g02452 1 33221061 33222775 ECH
Spst1g02452 1 33221061 33222775 Spst10g01786 10 18235722 18238091 ECH
Spst1g02452 1 33221061 33222775 Spst7g01406 7 60755310 60758513 PCT