Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst7g01406 ATGGGGCTGTCCTTCACCAAGTTGTTCAGCCGGCTGTTTGCCAAGAAAGAGATGCGTATACTTATGGTGGGTCTCGATGCTGCGGGTAAGACTACCATTCTGTACAAGCTCAAGCTTGGAGAAATTGTCACCACCATTCCCACCATTGGGTTTAATGTGGAAACTGTGGAATATAAGAACATCAGCTTCACTGTTTGGGATGTGGGAGGTCAGGACAAGATCCGCCCATTGTGGAGACATTACTTCCAAAATACCCAAGGACTTATCTTTGTGGTTGACAGTAATGACAGGGACCGAGTTGTTGAAGCTAGAGATGAGCTGCATAGAATGTTGAATGAGGACGAGTTGAGAGATGCCGTGCTTCTAGTTTTTGCCAACAAGCAAGATCTTCCAAATGCTATGAACGCTGCGGAGATCACTGATAAGCTTGGTCTTCATTCCCTCCGTCAGCGTCACTGGTATATCCAGAGCACATGTGCCACATCTGGTGAAGGGCTCTATGAAGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGAAATCAATACTATCGGACGGGTACTATGTCGTGAGCTTTTCGATCGCCGTCTTCAAGATATACCTCGAAGCAGATCTCGTTTCATTCTTGTGTTCAATTGGGGACAAAAGTAAAGACTCGAAACTGGAGGGACATCATTTAAACAACCAAGTTGGTATCATTGACATTTCTGTTGGCACTTTGTGGTATGACGGGGTACGTACATGGCAAGTCACCACATCATGA 765 0.4549 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKKSILSDGYYVVSFSIAVFKIYLEADLVSFLCSIGDKSKDSKLEGHHLNNQVGIIDISVGTLWYDGVRTWQVTTS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst7g01406 254 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Spst7g01406 254 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Spst7g01406 254 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Spst7g01406 254 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Spst7g01406 254 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Spst7g01406 254 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Spst7g01406 254 FunFam ADP-ribosylation factor 1 1 181 - -
Spst7g01406 254 PANTHER ADP RIBOSYLATION FACTOR-RELATED 7 176 IPR024156 GO:0005525
Spst7g01406 254 Gene3D - 4 186 IPR027417 -
Spst7g01406 254 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Spst7g01406 254 SMART rab_sub_5 18 180 - -
Spst7g01406 254 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Spst7g01406 254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 180 IPR027417 -
Spst7g01406 254 SMART arf_sub_2 1 181 - -
Spst7g01406 254 NCBIfam small GTP-binding protein domain 16 156 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst7g01406 Spst-Chr7 60755310 60758513 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst7g01406 K07937 - mof:131154376 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst7g01406 7 60755310 60758513 Spst7g01406 7 60755310 60758513 ECH
Spst1g02452 1 33221061 33222775 Spst7g01406 7 60755310 60758513 PCT