Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02361 ATGGATACCTTTCTGTTCACTTCTGAGTCAGTGAATGAGGGTCACCCTGACAAGCTTTGCGACCAAATTTCGGACGCAGTGCTCGATGCGTGCCTGGAGCAGGATCCAGAGAGCAAGGTTGCCTGTGAGACCTGCACCAAGACCAACCTGGTCATGGTGTTCGGAGAGATCACAACTAAGACCATTGTAGACTATGAGAAGATTGTACGCGACACATGTCGTTCTATAGGCTTTGTGTCCAATGATGTCGGTCTTGATGCTGACAATTGTAAGGTGCTGGTCTACCTGGAACAACAAAGTCCTGATATTGCTCAGGGAGTCCATGGCCACCTCACCAAACAACCTGAGGAGATAGGTGCGGGTGATCAGGGCCACATGTTTGGATATGCCACTGATGAAACACCTGAGCTTATGCCTCTCAGCCATGTGCTTGCAACCAAGCTCGGTGCTCGCCTCACCGAAGTGCGCAAGAATGGTACATGCACCTGGTTAAGACCTGATGGGAAGACCCAAGTTACTGTGGAGTATTACAATGACAATGGTGCTATGGTCCCGGTTCGTGTTCACACTGTCCTAATTTCAACTCAGCATGATGAAACCGTTACCAATGATGAGATTGCTGCTGATCTCAAAGAACATGTTATCAAGCCTGTTATACCAGAGAAGTACTTAGATGAGAAGACCATTTTCCATCTCAATCCATCAGGTCGTTTTGTCATTGGTGGTCCTCATGGAGATGCCGGTCTCACAGGGCGCAAAATCATCATTGACACATACGGTGGTTGGGGAGCTCATGGTGGGGGTGCCTTCTCTGGGAAGGATCCCACCAAGGTTGACAGGAGTGGAGCCTATATTGCTAGGCAGGCTGCAAAGAGCATTGTGGCCAGTGGTCTTGCTAGAAGGTGCCTTGTTCAAATCTCATATGCAATTGGTGTTCCTGACCCCTTATCAGTGTTTGTTGACACTTATGGGACTGGAAAGATTCCAGACAAGGAGATTCTGAAGATTGTGAAGGAAAACTTTGATTTCAGGCCTGGAATGATTTCCATTAATTTGGACCTCAAAAGGGGAGGAAATGGAAGGTTCTTGAAAACTGCCGCTTACGGTCACTTTGGAAGAGAGGACACTGACTTCACTTGGGAGGTGGTGAAGCCTCTCAAATGGGAGAATTCCCAGGAGTAA 1182 0.4805 MDTFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKTIVDYEKIVRDTCRSIGFVSNDVGLDADNCKVLVYLEQQSPDIAQGVHGHLTKQPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCTWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVASGLARRCLVQISYAIGVPDPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGREDTDFTWEVVKPLKWENSQE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02361 393 Gene3D - 4 242 - -
Spst1g02361 393 FunFam S-adenosylmethionine synthase 134 241 - -
Spst1g02361 393 FunFam S-adenosylmethionine synthase 11 127 - -
Spst1g02361 393 PIRSF MAT 1 392 IPR002133 GO:0004478|GO:0005524|GO:0006556
Spst1g02361 393 SUPERFAMILY S-adenosylmethionine synthetase 3 109 IPR022636 GO:0004478|GO:0006556
Spst1g02361 393 SUPERFAMILY S-adenosylmethionine synthetase 240 388 IPR022636 GO:0004478|GO:0006556
Spst1g02361 393 Hamap S-adenosylmethionine synthase [metK]. 2 393 IPR002133 GO:0004478|GO:0005524|GO:0006556
Spst1g02361 393 Pfam S-adenosylmethionine synthetase, central domain 117 238 IPR022629 GO:0004478|GO:0006556
Spst1g02361 393 CDD S-AdoMet_synt 5 384 - -
Spst1g02361 393 Gene3D - 117 381 - -
Spst1g02361 393 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 2 390 IPR002133 GO:0004478|GO:0005524|GO:0006556
Spst1g02361 393 Pfam S-adenosylmethionine synthetase, N-terminal domain 4 101 IPR022628 GO:0004478|GO:0006556
Spst1g02361 393 ProSitePatterns S-adenosylmethionine synthase signature 1. 119 129 IPR022631 GO:0004478|GO:0006556
Spst1g02361 393 Gene3D - 11 279 - -
Spst1g02361 393 SUPERFAMILY S-adenosylmethionine synthetase 115 239 IPR022636 GO:0004478|GO:0006556
Spst1g02361 393 ProSitePatterns S-adenosylmethionine synthase signature 2. 266 274 IPR022631 GO:0004478|GO:0006556
Spst1g02361 393 NCBIfam methionine adenosyltransferase 5 386 IPR002133 GO:0004478|GO:0005524|GO:0006556
Spst1g02361 393 FunFam S-adenosylmethionine synthase 262 381 - -
Spst1g02361 393 Pfam S-adenosylmethionine synthetase, C-terminal domain 240 381 IPR022630 GO:0004478|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02361 Spst-Chr1 32224178 32225359 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02361 K00789 - rvl:131327296 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02361 1 32224178 32225359 Spst7g01392 7 60238679 60239863 ECH
Spst3g02884 3 78350288 78351466 Spst1g02361 1 32224178 32225359 ECH
Spst1g02361 1 32224178 32225359 Spst1g02361 1 32224178 32225359 ECH