Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02207 ATGGCGAACCCAGAGGGTAGTAGCAGAGCTTCAACATGGTCACTTAAGGGAAACACTGCTCTCGTTACTGGAGGCACACGTGGGATCGGTAATGCTGTGGTGGAGGAACTGGCGGAGTTTGGTGCCACGGTGTACACTTGTTCCAGAAATGAAGAGGAGCTGAATGCATGCTTGAAGGAGTGGAAAGAGAAAGGGTTTTCGGTTTTTGGGTCGGTTTGTGATGCGTCTTCTCCAGCCCAAAGGGAGAAACTCATTCAACAAGTGGCCTCTGCCTTCAACGGCAAACTCAACATACTTGTAAACAATGTCGGAACAAATGTGAGGAAGCCAACGATAGAGTATACAACCGAAGAATATTCAAAATTGATGGCAACTAACTTGGACTCTGCATACTATCTGTGCCAACTTGCATATCCTCTTCTTAAAGCATCTGGAAATGGAAGTATTGTGTTCATTTCCTCTGTTGCAGGTCAGAAAAGTGTTGGTTCTGGAGCCATTTATGCAGCAACTAAAGCTGCAATCGATCATCTTTCCAAATATCTTGCTTGTGAATGGGCTAAAGACAATATCAGGAGCAACAGTGTTGCACCCTGGTATACCAAAACATCATTTGTGGAACATTTGCTCGCAAACAAAGAGCTTATTAATGAGATAATATCTCGAACGCCAGTAAAGCGATTGGCAGAAGCACATGAAGTGTCATCCTTGGTGACTTTCCTTTGCTTGCCAGCAGCTTCTTACATCACTGGACAAGTTATTTCTGTTGATGGAGGATTTAGTGTGCATGGATTTCAACCCAGCATGAGAATTACTTGA 816 0.44 MANPEGSSRASTWSLKGNTALVTGGTRGIGNAVVEELAEFGATVYTCSRNEEELNACLKEWKEKGFSVFGSVCDASSPAQREKLIQQVASAFNGKLNILVNNVGTNVRKPTIEYTTEEYSKLMATNLDSAYYLCQLAYPLLKASGNGSIVFISSVAGQKSVGSGAIYAATKAAIDHLSKYLACEWAKDNIRSNSVAPWYTKTSFVEHLLANKELINEIISRTPVKRLAEAHEVSSLVTFLCLPAASYITGQVISVDGGFSVHGFQPSMRIT 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02207 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
Spst1g02207 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Spst1g02207 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Spst1g02207 271 PANTHER TROPINONE REDUCTASE 12 263 IPR045000 GO:0016491
Spst1g02207 271 FunFam Short-chain dehydrogenase reductase 5 264 - -
Spst1g02207 271 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 262 IPR036291 -
Spst1g02207 271 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Spst1g02207 271 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Spst1g02207 271 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Spst1g02207 271 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Spst1g02207 271 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Spst1g02207 271 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
Spst1g02207 271 Gene3D - 3 264 - -
Spst1g02207 271 Pfam Enoyl-(Acyl carrier protein) reductase 26 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02207 Spst-Chr1 30474432 30477434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02207 13 266 Miscellaneous Gene Families AT2G29290 62.109 8.36e-115 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02207 K08081 - gmx:100819646 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02197 1 30416263 30418063 Spst1g02207 1 30474432 30477434 ECH
Spst1g00609 1 7952647 7953941 Spst1g02207 1 30474432 30477434 ECH
Spst1g02207 1 30474432 30477434 Spst1g02207 1 30474432 30477434 ECH