Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02197 ATGGCAGGGCCAGAAATCAGCAGTAGTAAAAGAGGAGGGCGATGGTCTCTCAATGGAATGACGGCTCTTGTCACCGGCGGCACCCGAGGGATCGGGCACGCCATAGTGAGTGACTTGGCCGCGTTTGGAGCCGCTGTGCACACTTGTTCCAGGACCCAATCAGAGCTCAAGAAGTTCGTAGAAGAGTGGCAGAGTGAGGGGTTTCAGGTTACTGGGTCGGTGTGTGACGTGTCCTCGCAGCCTCAGAGAGAGAGGCTTATTCAGGAAGTGGCATCCACCTTCAATGGCAAGCTTAACATCTGTGTTAACAACGTTGGAACAAACTTTAGAAAGCCAACAGTTGAGTACAGTGCTGAAGAATATTCACAGCTGATGACAGTTAATTTAGACTCCGCATTCCATCTGTGCCAACTTGCATATCCTCTTCTGAAAGCATCTGGAAAGGGAAGCATTGTGTTCATTTCATCTGTTGCTGGTATGGTCAGCTTGGGAACTGGAGCTGTCTATGCAGCAAGTAAAGCTGCCATTAATCAGCTTACAAAAAATCTGGCTTGTGAATGGGCAAAAGACAACATAAGAAGCAACTGTGTTGTACCATGGGCTACCAGAACCCCGCATGTAGAACATTTGTTGAAAAACCAAAAGCTTGTGGATGAAATTATGTCTCGTACTCCAATCAAGCGTATAGCAGAACCTGAAGAAGTGTCATCGTTGGTGACTTTCCTTTGCTTGCCTGGTGCTTCTTACATCACTGGACAAGCTATTTGTGTTGATGGAGGATTCACAGTGAATGGATTTCAACCCAGCATGAGAATTACCTGA 822 0.4696 MAGPEISSSKRGGRWSLNGMTALVTGGTRGIGHAIVSDLAAFGAAVHTCSRTQSELKKFVEEWQSEGFQVTGSVCDVSSQPQRERLIQEVASTFNGKLNICVNNVGTNFRKPTVEYSAEEYSQLMTVNLDSAFHLCQLAYPLLKASGKGSIVFISSVAGMVSLGTGAVYAASKAAINQLTKNLACEWAKDNIRSNCVVPWATRTPHVEHLLKNQKLVDEIMSRTPIKRIAEPEEVSSLVTFLCLPGASYITGQAICVDGGFTVNGFQPSMRIT 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02197 273 Pfam Enoyl-(Acyl carrier protein) reductase 28 262 - -
Spst1g02197 273 PANTHER TROPINONE REDUCTASE 14 265 IPR045000 GO:0016491
Spst1g02197 273 Gene3D - 11 265 - -
Spst1g02197 273 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
Spst1g02197 273 PRINTS Glucose/ribitol dehydrogenase family signature 225 245 IPR002347 -
Spst1g02197 273 PRINTS Glucose/ribitol dehydrogenase family signature 190 207 IPR002347 -
Spst1g02197 273 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Spst1g02197 273 PRINTS Glucose/ribitol dehydrogenase family signature 169 188 IPR002347 -
Spst1g02197 273 PRINTS Glucose/ribitol dehydrogenase family signature 21 38 IPR002347 -
Spst1g02197 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Spst1g02197 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 IPR002347 -
Spst1g02197 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Spst1g02197 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 19 264 IPR036291 -
Spst1g02197 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 156 184 IPR020904 GO:0016491
Spst1g02197 273 FunFam Short-chain dehydrogenase reductase 7 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02197 Spst-Chr1 30416263 30418063 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02197 14 268 Miscellaneous Gene Families AT2G29290 61.479 2.87e-119 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02197 K08081 - gmx:100527615 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02197 1 30416263 30418063 Spst1g02207 1 30474432 30477434 ECH
Spst1g02197 1 30416263 30418063 Spst1g02197 1 30416263 30418063 ECH