Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00609 ATGGCAGAAACAAAACTGAGCAGCTTCAAAGACGAAAGATGGTCACTCCATGGCATGACAGCTCTAGTTACAGGGGGCACCCGAGGCATTGGGTATGCAATAGCAGAAGAATTGGCAGAATTTGGAGCATCTGTGCATATATGTGCCCGGAAACAAGAAGATGTTGATAAATGCTTAGAGGAATGGAAAAGAAAAGGATTTCGGATAACAGGGTCCGTATGTGACGTACTGTCCCGTGACCAACGTCAAAATTTAATGAAAAATGTTGCTTCCATCTTTAACGGAAAGCTCAACATTCTGATAAACAATGTTGGAACATCTATACCTAAAAACCTGATAGATTATACTGCAGAAGATGTAAGTACAATAATGGGAACTAATTTTGAGTCTTGTTACCACCTATGTCAACTAGCATATCCACTTCTCAAAGCGTCTGGATATGGGAGCATAGTATTCATATCCTCCATTGCAGGTCTTAAAGCTTTCCCTTTATCTTCTATCTATGCATCCTCTAAAGGAGCTATGAATCAATTCACCAAGAATGTAGCATTGGAATGGGCAAAGGATAATATTCGTGCAAATGCTGTAGCACCTGGACCTATCAAGACCGTACTCCTGGATTCTTTCATGGTATGTATGCTGTGCTAG 648 0.4074 MAETKLSSFKDERWSLHGMTALVTGGTRGIGYAIAEELAEFGASVHICARKQEDVDKCLEEWKRKGFRITGSVCDVLSRDQRQNLMKNVASIFNGKLNILINNVGTSIPKNLIDYTAEDVSTIMGTNFESCYHLCQLAYPLLKASGYGSIVFISSIAGLKAFPLSSIYASSKGAMNQFTKNVALEWAKDNIRANAVAPGPIKTVLLDSFMVCMLC 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00609 215 Pfam short chain dehydrogenase 20 206 IPR002347 -
Spst1g00609 215 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Spst1g00609 215 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Spst1g00609 215 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Spst1g00609 215 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Spst1g00609 215 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Spst1g00609 215 PANTHER TROPINONE REDUCTASE 12 207 IPR045000 GO:0016491
Spst1g00609 215 Gene3D - 3 213 - -
Spst1g00609 215 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Spst1g00609 215 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Spst1g00609 215 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Spst1g00609 215 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Spst1g00609 215 FunFam Short-chain dehydrogenase reductase 5 211 - -
Spst1g00609 215 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 209 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00609 Spst-Chr1 7952647 7953941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00609 11 210 Miscellaneous Gene Families AT2G29330 57.500 8.89e-82 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00609 K08081 - gmx:100306108 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00609 1 7952647 7953941 Spst1g00609 1 7952647 7953941 ECH
Spst1g00609 1 7952647 7953941 Spst1g02207 1 30474432 30477434 ECH